| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4075662 = | 4 (0.050) | 12 (0.220) +CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCA |
10/152 | NT | 37.4% | intergenic (‑204/+237) | PP_3586/tpx | transposase/2‑Cys peroxiredoxin |
| ? | NC_002947 | 5545674 = | 62 (0.700) | intergenic (‑766/+111) | rpsF/rlmB | 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB | |||||
CAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTT > NC_002947/4075554‑4075810 | gcgccctcgcccgtaggagatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCttttt > 1:1374367‑M1/109‑150 (MQ=255) accactgtaggagatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCAACCGCcttttctt > 1:41195‑M1/103‑141 (MQ=255) accactgtaggagatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCAACCGCcttttctt < 2:41195‑M1/39‑1 (MQ=255) taggagatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCAACCGCct > 1:2104730‑M1/96‑128 (MQ=255) gagatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCAAcc > 2:1768019‑M1/93‑121 (MQ=255) gagatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCAAcc < 1:1768019‑M1/29‑1 (MQ=255) acccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCaa > 1:2172679‑M1/87‑113 (MQ=255) acccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCaa < 2:2172679‑M1/27‑1 (MQ=255) acccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCAAcc < 1:1237287‑M1/29‑1 (MQ=255) acccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCAAcc > 2:1237287‑M1/87‑115 (MQ=255) ttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCAACCGCctt > 1:1277628‑M1/78‑111 (MQ=255) ttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCAACCGCctt < 2:1277628‑M1/34‑1 (MQ=255) tacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCAAcc > 2:449527‑M1/42‑70 (MQ=255) tacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCAAcc < 1:449527‑M1/29‑1 (MQ=255) ggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCAAcc < 1:1240879‑M1/29‑1 (MQ=255) ggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCAAcc > 2:1240879‑M1/39‑67 (MQ=255) ctgacattttgaaaaagAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTaca < 1:59451‑M1/133‑2 (MQ=255) cccTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGAt < 2:66626/150‑1 (MQ=32) cccTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGAt > 1:913599/1‑150 (MQ=32) tAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTc > 1:938299/1‑150 (MQ=34) cAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTcaca < 1:2307557/150‑1 (MQ=37) aaaGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATTTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAg < 1:401660/150‑1 (MQ=38) aaagAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCAt > 2:1430117‑M1/5‑89 (MQ=255) aaagAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCAt < 1:1430117‑M1/85‑1 (MQ=255) aGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGCGATGTCACAGcc > 2:1442581/1‑150 (MQ=38) gAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGAAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCtt < 2:964071‑M1/149‑1 (MQ=255) | CAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTT > NC_002947/4075554‑4075810 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |