New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 4957603 =115 (1.300)5 (0.060) 5/218 NT 5.2% intergenic (‑41/+122) fliH/fliG flagellar assembly protein FliH/flagellar motor switch protein
?NC_002947 4957693 = 83 (1.070)intergenic (‑131/+32) fliH/fliG flagellar assembly protein FliH/flagellar motor switch protein

Only 100 of 141 total aligned reads displayed.

CGGTTCGGGCTCCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCG  >  NC_002947/4957455‑4957752
                                                                                                                                                     |                                                                                                                                                       
ccggtacgggtcagcgacgtggaaaccgcgcagaaagaaatcctcaccattgcccggcgcatggccgaggccggcgagatcgtgctcggcggcaagggcgccgaggaaatgatctaaggtattcgcgatcccatagccgacgccgccttt                                                                                                                                                         <  2:2242102‑M1/1‑1 (MQ=255)
  gTTCGGGCTCCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGt                                                                                                                                                      <  1:2020464/150‑1 (MQ=255)
   ttaaggCTCCAGTTGCAGCTCGAATCGTGTCAGCGTCCACACATCCACGCCCTCGAGGTCGAGGGTGACTG‑GCAGTTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTa                                                                                                                                                     <  1:513613/146‑1 (MQ=255)
   ttCGGGCTCCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTa                                                                                                                                                     <  1:1190731/150‑1 (MQ=255)
    tacgggtcagcgacgtggaaaccgcgcagaaagaaatcctcaccattgcccggcgcatggccgaggccggcgagatcgtgctcggcggcaagggcgccgaggaaatgatctaaggtattcgcgatcccatagccgacgccgccttTTGTa                                                                                                                                                     <  2:1477762‑M1/5‑1 (MQ=255)
     acgggtcagcgacgtggaaaccgcgcagaaagaaatcctcaccattgcccggcgcatggccgaggccggcgagatcgtgctcggcggcaagggcgccgaggaaatgatctaaggtattcgcgatcccatagccgacgccgccttTTGTAg                                                                                                                                                    >  2:1177898‑M1/145‑150 (MQ=255)
        gCTCCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGc                                                                                                                                                >  1:1737695/1‑150 (MQ=255)
          tCCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGTGCCCTTGTAGGAGcag                                                                                                                                              <  2:1737695/150‑3 (MQ=255)
          tCCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCgg                                                                                                                                              >  2:1573083/1‑150 (MQ=255)
            agcgacgtggaaaccgcgcagaaagaaatcctcaccattgcccggcgcatggccgaggccggcgagatcgtgctcggcggcaagggcgccgaggaaatgatctaaggtattcgcgatcccatagccgacgccgccttTTGTAGGAGCggg                                                                                                                                             <  2:2193638‑M1/13‑1 (MQ=255)
             gcgacgtggaaaccgcgcagaaagaaatcctcaccattgcccggcgcatggccgaggccggcgagatcgtgctcggcggcaagggcgccgaggaaatgatctaaggtattcgcgatcccatagccgacgccgccttTTGTAGGAGCGGGt                                                                                                                                            >  2:1317129‑M1/137‑150 (MQ=255)
              cgacgtggaaaccgcgcagaaagaaatcctcaccattgcccggcgcatggccgaggccggcgagatcgtgctcggcggcaagggcgccgaggaaatgatctaaggtattcgcgatcccatagccgacgccgccttTTGTAGGAGCGGGtt                                                                                                                                           >  2:597362‑M1/136‑150 (MQ=255)
              cgacgtggaaaccgcgcagaaagaaatcctcaccattgcccggcgcatggccgaggccggcgagatcgtgctcggcggcaagggcgccgaggaaatgatctaaggtattcgcgatcccatagccgacgccgccttTTGTAGGAGCGGGtt                                                                                                                                           >  1:911106‑M1/136‑150 (MQ=255)
                   gggTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCcg                                                                                                                                     <  1:1742371/150‑1 (MQ=255)
                   gggTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCcg                                                                                                                                     >  2:16223/1‑150 (MQ=255)
                     gTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCcgcg                                                                                                                                   >  1:1633298/1‑150 (MQ=255)
                      tCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGa                                                                                                                                  >  2:40029/1‑150 (MQ=255)
                         aaGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATg                                                                                                                               >  2:1498447/1‑150 (MQ=255)
                          aGCTTGGCAGCGTCCACAAATCCGCGCCCTCGAGGTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGc                                                                                                                              >  2:1959177/1‑150 (MQ=255)
                             ttGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGAAACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTc                                                                                                                           <  1:509247/150‑1 (MQ=255)
                                     gTCCACACATCCACGCCCTCGAGGTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGa                                                                                                                   >  1:413792/1‑150 (MQ=255)
                                      tCCACACATCCACGCCCTCGAGGTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGCCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGAc                                                                                                                  >  2:323588/1‑150 (MQ=255)
                                         acacaTCCACGCCCTCGAGGTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAAc                                                                                                               >  2:1935735/1‑150 (MQ=255)
                                           acaTCCACGCCCTCGAGGTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCt                                                                                                             >  2:1066826/1‑150 (MQ=255)
                                           acaTCCACGCCCTCGAGGTCGAGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCt                                                                                                             >  1:1699473/1‑150 (MQ=255)
                                              tCCACGCCCTCGAGGTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGa                                                                                                          >  1:118393/1‑150 (MQ=255)
                                              tCCACGCCCTCGAGGTCGAGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGa                                                                                                          <  2:1699473/150‑1 (MQ=255)
                                                cACGCCCTCGAGGTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGAtt                                                                                                        >  2:2230561/1‑150 (MQ=255)
                                                cACGCCCTCGAGGTCGCGGG‑CACGGAACAGGTCGCTGGGGTGGTGTTCGTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCTGACACGGTGCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTAGGCAGCAACAACCTCGAtt                                                                                                        <  2:1379232/150‑1 (MQ=255)
                                                 aCGCCCTCGAGGTAACGGG‑CACGGAGCAGGTCGCCGGGCGGGAGTTAGTTGGTGGGCATGCGGTCATGTTCGCAAACCATGTTCGGCCGACACGGTGCCTTGTGGGAGCGGGTTCACCCGCGAATGCGTGGGCAGCGAGAACCTCGAGTg                                                                                                       >  2:1088230/1‑150 (MQ=255)
                                                     ccTCGAGGTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAg                                                                                                   >  1:999114/1‑150 (MQ=255)
                                                       tCGAGGTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGa                                                                                                 >  2:1942379/1‑150 (MQ=255)
                                                        cGAGGTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGAc                                                                                                <  1:1066826/150‑1 (MQ=255)
                                                           ggTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGa                                                                                             >  2:340223/1‑150 (MQ=255)
                                                                  gg‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTTTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTTTAGGAGCGGGTTTACCCGCGAATGCGTCGGCAGCGACACCCTCGATTGCCAGGACCGACGCCttt                                                                                      <  2:121356/150‑2 (MQ=255)
                                                                      aCGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTcgcg                                                                                   >  2:781018/1‑150 (MQ=255)
                                                                       cGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCgg                                                                                  <  1:1959177/150‑1 (MQ=255)
                                                                       cGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCgg                                                                                  <  1:40029/150‑1 (MQ=255)
                                                                       cGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCgg                                                                                  <  1:2230561/150‑1 (MQ=255)
                                                                        ggATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCggg                                                                                 >  2:1636804/1‑150 (MQ=255)
                                                                             aGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAAc                                                                            <  1:308685/150‑1 (MQ=255)
                                                                              ggTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAAcc                                                                           >  1:1576911/1‑150 (MQ=255)
                                                                              ggTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAAcc                                                                           <  1:1935735/150‑1 (MQ=255)
                                                                              ggTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAAcc                                                                           <  2:1576911/150‑1 (MQ=255)
                                                                               gTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGCATGCGTCGACACCGACACCCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAAccc                                                                          <  1:1573083/150‑1 (MQ=255)
                                                                                    tGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTGAACCCGCTcc                                                                     >  2:1905119/1‑150 (MQ=255)
                                                                                        gtggtgTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACa                                                                 <  1:1498447/150‑1 (MQ=255)
                                                                                         tggtgTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACa‑a                                                               >  1:1674087/1‑150 (MQ=255)
                                                                                           gtgtTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGaa                                                                                                                                 >  1:891637/1‑83 (MQ=255)
                                                                                           gtgtTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGaa                                                                                                                                 <  2:891637/83‑1 (MQ=255)
                                                                                           gcaagggcgccgaggaaatgatctaaggtattcgcgatcccatagccgacgccgccttTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACa‑aa‑a                                                            <  2:1521479‑M1/92‑1 (MQ=255)
                                                                                             gtTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑Agg                                                          >  1:2193703/1‑150 (MQ=255)
                                                                                             gtTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑Agg                                                          <  2:118393/150‑1 (MQ=255)
                                                                                              ttCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑Aggc                                                         <  2:1633298/150‑1 (MQ=255)
                                                                                               tCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑Aggcg                                                        <  2:903675/150‑1 (MQ=255)
                                                                                               gggcgccgaggaaatgatctaaggtattcgcgatcccatagccgacgccgccttTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGc                                                                                          >  2:973144‑M1/55‑118 (MQ=255)
                                                                                                cTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑Aggcgg                                                       >  2:40546/1‑150 (MQ=255)
                                                                                                    ggtggGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTc                                                   <  1:436459/150‑1 (MQ=255)
                                                                                                      tggGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCgg                                                 >  1:2195102/1‑150 (MQ=255)
                                                                                                           aTGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCt                                                                                        >  1:1952231/1‑108 (MQ=255)
                                                                                                           aTGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTATACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATg                                            <  2:1646540/150‑1 (MQ=255)
                                                                                                            tGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATgg                                           <  1:357267/150‑1 (MQ=255)
                                                                                                              cTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTa                                              <  2:489127/145‑1 (MQ=255)
                                                                                                                 tCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATGGGATcg                                      >  2:1650604/1‑150 (MQ=255)
                                                                                                                  cATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATGGGATcgc                                     <  1:363022/150‑1 (MQ=255)
                                                                                                                  cATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATGGGATcgc                                     <  1:1636804/150‑1 (MQ=255)
                                                                                                                  cATGTTCTCAAACCATGTTCGGCCGACACGATCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATGGGATcgc                                     <  1:1635664/150‑1 (MQ=255)
                                                                                                                        ctcAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATGGGATCGCGAATAc                               <  1:340223/150‑1 (MQ=255)
                                                                                                                         tcAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGAtt                                                                                                        >  2:2047444/1‑78 (MQ=255)
                                                                                                                         tcAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGAtt                                                                                                        <  1:2047444/78‑1 (MQ=255)
                                                                                                                         tcAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATGGGATcgc                                     >  1:391604/1‑143 (MQ=255)
                                                                                                                         tcAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATGGGATcgc                                     <  2:391604/143‑1 (MQ=255)
                                                                                                                         tcAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATGGGATCGCGAATAcc                              >  2:1170194/1‑150 (MQ=255)
                                                                                                                           aaaCCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCg                                                                                                                    <  2:610818/64‑1 (MQ=255)
                                                                                                                           aaaCCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCg                                                                                                                    >  1:610818/1‑64 (MQ=255)
                                                                                                                           aaaCCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATGGGATCGCGAATACCtt                            >  1:102883/1‑150 (MQ=255)
                                                                                                                           aaaCCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATGGGATCGCGAATACCtt                            >  2:239514/1‑150 (MQ=255)
                                                                                                                            aaCCGTGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCACTTCTAGC‑AC‑AGGCGGCTTCAGCGCGAGTTTCGCGAATACCTTa                           >  2:122054/1‑150 (MQ=255)
                                                                                                                            aaCCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑Ag                                                           <  1:1964915/118‑1 (MQ=255)
                                                                                                                            aaCCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑Ag                                                           >  2:1964915/1‑118 (MQ=255)
                                                                                                                            aaCCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATGGGATCGCGAATACCTTa                           <  1:606794/150‑1 (MQ=255)
                                                                                                                              ccATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTa                                                                   >  1:2311712/1‑110 (MQ=255)
                                                                                                                              ccATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTa                                                                   <  2:2311712/110‑1 (MQ=255)
                                                                                                                               cATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGAt                        >  1:1477762/1‑150 (MQ=255)
                                                                                                                                 tGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCa                      >  1:1950641/1‑150 (MQ=255)
                                                                                                                                   ttCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTAAA‑AACAGAGGACGT‑GCCGATGACAGCGCTAATACCTGAGATCAtt                    >  2:842372/1‑150 (MQ=255)
                                                                                                                                    tCGGCCGACCCGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCAttt                   <  2:18177/150‑1 (MQ=255)
                                                                                                                                       gCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCt                >  1:867525/1‑150 (MQ=255)
                                                                                                                                           acacGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGgc            <  1:842372/150‑1 (MQ=255)
                                                                                                                                            cacGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCT‑CAACATCA‑TCGTCGCGGCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGgcg           >  2:1814271/1‑150 (MQ=255)
                                                                                                                                             acGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATGGGATCGCGAATACCt                             >  2:96182/1‑131 (MQ=255)
                                                                                                                                             acGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATGGGATCGCGAATACCt                             <  1:96182/131‑1 (MQ=255)
                                                                                                                                              cGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGcc         <  1:1688456/150‑1 (MQ=255)
                                                                                                                                               ggTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTAt                                             <  1:1508772/113‑1 (MQ=255)
                                                                                                                                               ggTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGa                         >  1:1908021/1‑133 (MQ=255)
                                                                                                                                                   ccTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTc                                                                      <  1:1983594/86‑1 (MQ=255)
                                                                                                                                                   ccTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTc                                                                      >  2:1983594/1‑86 (MQ=255)
                                                                                                                                                   ccTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑Ag                                                           <  1:115498/95‑1 (MQ=255)
                                                                                                                                                     TTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGt                                                    >  1:43101‑M1/1‑100 (MQ=255)
                                                                                                                                                     TTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTgccg  <  2:2227221‑M1/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                       
CGGTTCGGGCTCCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGG‑CACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTCACCCGCGAATGCGTCGGCAGCGACAACCTCGATTGCCAGGACCGACGCCTTCGCGGGTAAACCCGCTCCTACA‑AA‑AGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCG  >  NC_002947/4957455‑4957752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.