New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 182052	98 (1.110)	5 (0.060) +GGTT	4/240	NT	6.9%	intergenic (+41/+24)	PP_5SB/PP_0160	5S ribosomal RNA/ferrioxamine receptor
	?	NC_002947	5307483 =	41 (0.460)					intergenic (‑184/+2)	recC/PP_5SG	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA

TATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGCGATGCATCGTTTCACTACTGAGTTCGGGATGGGATCAGGTGGTTCCAATGCTCTATGGTCGTCAAGAAATTCTGTTGCCGGAATGTCCAGATGGA  >  NC_002947/5307341‑5307631                                                                                                                                                 |                                                                                                                                                     tatCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCtt                                                                                                                                               <  2:1288081/150‑1 (MQ=255)     accacctgatcccatcccgaactcagcagtgaaacgatgcatcgccgatggtagtgtggggtttccccatgtgagagtaggtcatcgtcaagattcaaacccaaagcccctgtctgcatcgcagacaggggctttgggttTGAATCTTGa                                                                                                                                             <  2:1604660‑M2/10‑1 (MQ=255)     aCGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGAc                                                                                                                                            <  1:1329867/150‑1 (MQ=255)           aCATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGAcc                                                                                                                                     >  2:879374/1‑150 (MQ=255)             aTGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTa                                                                                                                                   >  1:642183/1‑150 (MQ=255)                     gCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTcaca                                                                                                                           <  2:642183/150‑1 (MQ=255)                     gCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTca                                                                                                                             <  2:768275/148‑1 (MQ=255)                     gCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTca                                                                                                                             >  1:768275/1‑148 (MQ=255)                       ctaaTGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAAt                                                                                                                                                      <  2:176418/119‑1 (MQ=255)                       cGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAAt                                                                                                                                                      >  1:176418/1‑121 (MQ=255)                       cGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATg                                                                                                                         <  1:1861990/150‑1 (MQ=255)                       cGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATg                                                                                                                         >  2:1360550/1‑150 (MQ=255)                        gAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATgg                                                                                                                        <  2:686761/150‑1 (MQ=255)                            gCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGaa                                                                                                                    >  2:1057113/1‑150 (MQ=255)                               gaatcgCTGCGGGAGCGGGCACGGCCGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAAcc                                                                                                                 >  1:259202/6‑150 (MQ=17)                               aTCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGa                                                                                                                                             >  1:2273651/1‑122 (MQ=255)                               aTCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGa                                                                                                                                             <  2:2273651/122‑1 (MQ=255)                                  aGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCca                                                                                                              <  2:985301/150‑1 (MQ=255)                                     cTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCtt                                                                                                                                               <  1:1669746/114‑1 (MQ=255)                                     cTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCtt                                                                                                                                               >  2:1669746/1‑114 (MQ=255)                                      tGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCTCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACt                                                                                                          >  1:351112/1‑150 (MQ=255)                                        cGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTAc                                                                                                        >  2:201277/1‑150 (MQ=255)                                          ggAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCa                                                                                                      >  2:970750/1‑150 (MQ=255)                                             gCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGCACGGGCCATCGACGCTGATAGAGTTGCACATGGGGAAACCCCACACTACCATCg                                                                                                   <  1:879374/150‑1 (MQ=18)                                               ggCCGTGCACGCCGTCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGACCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGc                                                                                                 <  2:1812834/150‑1 (MQ=17)                                                        cGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCGACTCTCACATGGGGAAACCCCACACTACCATCGGCGATGCATCg                                                                                        >  2:1688046/1‑150 (MQ=255)                                                             ccGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGCGATGCATCGTTTCa                                                                                   <  2:259202/150‑1 (MQ=255)                                                             ccGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGCGATGCATCGTTTCa                                                                                   >  1:31865/1‑150 (MQ=255)                                                             ccGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGCGATGCATCGTTTCa                                                                                   >  2:700784/1‑150 (MQ=255)                                                                 aGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGCGATGCATCGTTTCactac                                                                               >  1:399049/1‑150 (MQ=255)                                                                  gCGATTCGCTCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGCGATGCATCGTTTCactact                                                                              <  2:351112/150‑1 (MQ=255)                                                                  gCGATTCGCGCAGGTCGAG‑TTTTTTGCCCCCAAAGACAGGAGCCCGTCCGTC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGCGATGCATCGTTTCactact                                                                              <  2:2007912/150‑1 (MQ=14)                                                                       ccatgtgagagtaggtcatcgtcaagattcaaacccaaagcccctgtctgcatcgcagacaggggctttgggttTGAATCtt                                                                                                                                               <  2:1192646‑M2/8‑1 (MQ=255)                                                                       ccatgtgagagtaggtcatcgtcaagattcaaacccaaagcccctgtctgcatcgcagacaggggctttgggttTGAATCtt                                                                                                                                               >  1:1192646‑M2/75‑82 (MQ=255)                                                                           gcAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATgg                                                                                                                        <  2:655130/99‑1 (MQ=38)                                                                           gcAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATgg                                                                                                                        >  1:655130/1‑99 (MQ=39)                                                                           gcAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCAC‑ACCTTCTGTTCGATGATAATGGTTTTGCGAAATGCATCTTCTCGAGGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGCGATGCATCGTTTCACTACTGAGTTCggg                                                                     <  1:1104740/150‑1 (MQ=11)                                                                               gTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGCGATGCATCGTTTCACTACTGAGTTCgggatgg                                                                 >  1:1423049/1‑150 (MQ=34)                                                                                tCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATgg                                                                                                                        >  1:1737207/1‑94 (MQ=35)                                                                                tCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATgg                                                                                                                        <  2:1737207/94‑1 (MQ=35)                                                                                   aG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGCGATGCATCGTTTCACTACTGAGTTCGGGATGGGATc                                                             <  1:1618364/150‑1 (MQ=31)                                                                                   aG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGCGATGCATCGTTTCACTACTGAGTTCGGGATGGGATc                                                             >  2:819252/1‑150 (MQ=31)                                                                                    g‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGCGATGCATCGTTTCACTACTGAGTTCGGGATGGGATCa                                                            >  1:2109923/1‑150 (MQ=11)                                                                                                          ccgatctcctgtctgcgatgcagacaggggctttgggttTGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGCGATGCATCGTTTCACTGCTGAGTTCGGGATGGGATCAGGTGGTTCCAATGCTCTATg                                        <  1:1086954‑M2/111‑1 (MQ=255)                                                                                                                          atcgcagacaggggctttgggttTGACTCTTGCCGATGACATACTCTCACCTGGGGAAACCCCACACTAACCTCGGCGATGCATCGTTTCACTACTGAGTTCGGGATGGGATCAGGTGGTTCCACTACTCTATGGACGCAAAGAACTTCt                        >  2:79287‑M2/24‑150 (MQ=255)                                                                                                                                   ggggTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGCGATGCATCGTTTCACTACTGAGTTCGGGATGGGATCAGGTGGTTCCAATGCTCTATGGTCGTCAAGAAATTCTGTTGCCGGa               >  1:749901/1‑150 (MQ=32)                                                                                                                                       ttttGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGCGATGCATCGTTTCACTACTGAGTTCGGGATGGGATCAGGTGGTTCCAATGCTCTATGGTCGTCAAGAAATTCTGTTGCCGGAATGt           >  1:609856/1‑150 (MQ=32)                                                                                                                                        ctttgggttTGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGCGATGCATCGTTTCACTACTGAGTTCGGGATGGGATCAGGTGGTTCCAATGCTCTATGGTCGTCAAGAAATTCTGTTGCCAGAATGTc          <  1:79287‑M2/141‑1 (MQ=255)                                                                                                                                           gCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGCGATGCATCGTTTCACTACTGAGTTCGGGATGGGATCAGGTGGTTCCAATGCTCTATGGTCGTCAAGAAATTCTGTTGCCGGAATGTCCAg       >  2:2151692/1‑150 (MQ=32)                                                                                                                                             gAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCCCACTACCAACGGCGATGCATCGTTTCACTACTGAGTTCGGGATGGGATCAGGTGGTTCCAATGCTCTATGGTCGTCAAGAAATTCTGTTGCCGGAATGTCCAGAt     <  1:1688046/150‑1 (MQ=17)                                                                                                                                             gAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGCGATGCATCGTTTCACTACTGAGTTCGGGATGGGATCAGGTGGTTCCAATGCTCTATGGTCGTCAAGAAATTCTGTTGCCGGACTGTCCAGAt     >  2:848297/1‑150 (MQ=17)                                                                                                                                                aTGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGCGATGCATCGTTTCACTACTGAGTTCGGGATGGGATCAGGTGGTTCCAATGCTCTATGGTCGTCAAGAAATTCTGTTGCCGGAATGTCCAGATGGa  <  2:106673/150‑1 (MQ=32)                                                                                                                                                 |                                                                                                                                                     TATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAG‑TTTTTTGCCCACAAAGACAAAACCCCTACCTGC‑GTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGCGATGCATCGTTTCACTACTGAGTTCGGGATGGGATCAGGTGGTTCCAATGCTCTATGGTCGTCAAGAAATTCTGTTGCCGGAATGTCCAGATGGA  >  NC_002947/5307341‑5307631

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.