New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4925023	84 (0.950)	12 (0.140)	11/244	NT	12.7%	coding (72/855 nt)	PP_4334	ParA family protein
	?	NC_002947	5222630 =	NA (NA)					coding (8/840 nt)	PP_4602	AraC family transcriptional regulator

TCGGCAGCAACAGCGATACGCCGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGAT  >  NC_002947/5222481‑5222759                                                                                                                                                      |                                                                                                                                  tCGGCAGCAACAGCGATACGCCGGCGAGCAGGGCCTCGAGGGTGGCGCGACGGGGGTGGTCGAGGGACTGGTAGAGCGTTTCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCtt                                                                                                                                   <  1:2272760/150‑1 (MQ=255)    gcagcaACAGCGATACGCCGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTa                                                                                                                                >  2:2158885/1‑150 (MQ=255)      agcaACAGCGATACGCCGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATc                                                                                                                              <  2:1450844/150‑1 (MQ=255)      agcaACAGCGATACGCCGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATc                                                                                                                              <  1:74473/150‑1 (MQ=255)         aaCAGCGATACGCCGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATcaaa                                                                                                                           >  2:589460/1‑150 (MQ=255)         aaCAGCGATACGCCGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATcaaa                                                                                                                           <  1:1448947/150‑1 (MQ=255)         aaCAGCGATACGCCGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTCCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATcaaa                                                                                                                           <  1:1219891/150‑1 (MQ=255)                 tACGCCGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAAGCCGCTTCTATCAAACAAAAGAt                                                                                                                   >  2:274710/1‑150 (MQ=255)                 tACGCCGGCGAGCAGGGCCTCGAGGGTGGAGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGAt                                                                                                                   >  1:470026/1‑150 (MQ=255)                   cGCCGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGTGGGTGTCGGTCATCTGTTGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATaa                                                                                                                 <  1:731161/150‑1 (MQ=255)                        gCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCAc                                                                                                            <  1:2098742/150‑1 (MQ=255)                              aGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGttct                                                                                                      >  2:589489/1‑150 (MQ=255)                                ggCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGttcttt                                                                                                    >  2:1764742/1‑150 (MQ=255)                                 gCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGttctttc                                                                                                   <  1:589489/150‑1 (MQ=255)                                 gCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGttctttc                                                                                                   <  1:589460/150‑1 (MQ=255)                                 gCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGttctttc                                                                                                   <  1:1975285/150‑1 (MQ=255)                                   cTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTa                                                                                                 <  1:49238/150‑1 (MQ=255)                                   cTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTa                                                                                                 >  2:787195/1‑150 (MQ=255)                                   cTCGAGGGTGGCGGGGCGGTGCTGGGCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTa                                                                                                 <  2:413412/150‑1 (MQ=255)                                    tCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTAt                                                                                                                               >  1:504571/1‑119 (MQ=255)                                    tCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTAt                                                                                                                               <  2:504571/119‑1 (MQ=255)                                    tCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACaaaa                                                                                                                      >  2:752734/1‑128 (MQ=255)                                    tCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACaaaa                                                                                                                      <  1:752734/128‑1 (MQ=255)                                     cGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGc                                                                                               >  2:1522686/1‑150 (MQ=255)                                        gggTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGaa                                                                                            >  2:2098217/1‑150 (MQ=255)                                               ggggcggTGCTGGTCGAGGGACTGGTATAGGGTTGCCAGGGGGGTGTCGGTTATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGaaaacgcct                                                                                     <  1:671843/150‑6 (MQ=255)                                                     gTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGgcgcg                                                                               >  1:2182430/1‑150 (MQ=255)                                                                 ggACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAAAAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATgg                                                                   <  1:689323/150‑1 (MQ=255)                                                                   aCTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATggcg                                                                 <  1:1433233/150‑1 (MQ=255)                                                                        tAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGaa                                                            >  1:1951501/1‑150 (MQ=255)                                                                        tAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGaa                                                            <  1:1361001/150‑1 (MQ=255)                                                                          gagGGTTGCCGGGGGGGTGTGCGTCATTTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAATCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTGCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAgt                                                          <  1:819647/150‑1 (MQ=18)                                                                          gagGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAgt                                                          >  2:1743543/1‑150 (MQ=255)                                                                          gagGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAgt                                                          <  1:787195/150‑1 (MQ=255)                                                                          gagGGTTGCCAGGGGGGTGGCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAgt                                                          >  1:1832689/1‑150 (MQ=255)                                                                           agGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAgtg                                                         <  1:361667/150‑1 (MQ=255)                                                                             ggTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGttct                                                                                                      <  1:1719953/103‑1 (MQ=255)                                                                             ggTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGtt                                                       >  2:690811/1‑150 (MQ=255)                                                                             ggTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCGTCTATCAAACAAAAGATAACCCACTGttct                                                                                                      >  2:1719953/1‑103 (MQ=255)                                                                               ttGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCTTCATCGACGGTGACCCCACTTCTATAAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCa                                                     <  1:274710/150‑1 (MQ=21)                                                                               ttGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCa                                                     <  2:1352899/150‑1 (MQ=255)                                                                                  ccAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGTCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCActc                                                  >  1:273393/1‑150 (MQ=255)                                                                                  ccAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCActc                                                  <  1:2098217/150‑1 (MQ=255)                                                                                   cAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTAGCGGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCActct                                                 >  1:2199895/1‑150 (MQ=255)                                                                                    aGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACtctt                                                <  1:690811/150‑1 (MQ=255)                                                                                     ggggggTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGTTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGttctttc                                                                                                   <  1:45728/98‑1 (MQ=255)                                                                                     ggggggTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGttctttc                                                                                                   >  2:45728/1‑98 (MQ=255)                                                                                          gtgtCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATAc                                          >  2:578159/1‑150 (MQ=255)                                                                                             tCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTg                                       >  2:2009901/1‑150 (MQ=255)                                                                                               ggTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATc                                                                                                                              >  2:2315938/1‑61 (MQ=255)                                                                                               ggTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATc                                                                                                                              <  1:2315938/61‑1 (MQ=255)                                                                                               ggTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCGCTCTTCTATACGTGGt                                     <  2:2182430/150‑1 (MQ=255)                                                                                               ggTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGt                                     >  2:2213999/1‑150 (MQ=255)                                                                                               ggTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGt                                     <  2:1126777/150‑1 (MQ=255)                                                                                                gTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAGAACAGTTTCGTGGCGTCAATGTCGGCGAAGTGTTCACTCTTCTATACGTGGTc                                    <  1:2158885/150‑1 (MQ=17)                                                                                                gTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTc                                    <  1:1522686/150‑1 (MQ=255)                                                                                                   aTCTGTCGGTTCTCTGATGGCCGGGCCCGCCTCGTCGTAGATGAAGCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTcaca                                 <  2:1777244/150‑1 (MQ=14)                                                                                                       gTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAAc                                                                                      >  1:1350022/1‑93 (MQ=255)                                                                                                       gTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAAc                                                                                      <  2:1350022/93‑1 (MQ=255)                                                                                                        tCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCGAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGaa                                                            >  1:136115/1‑118 (MQ=255)                                                                                                        tCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCGAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGaa                                                            <  2:136115/118‑1 (MQ=255)                                                                                                        tCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATACCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAgagat                            >  1:1777244/1‑146 (MQ=255)                                                                                                          ggTTCTCTGCTGGCTGGGCCGGTCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATgg                                                                   <  2:1598953/109‑1 (MQ=255)                                                                                                          ggTTCTCTGCTGGCTGGGCCGGTCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATgg                                                                   >  1:1598953/1‑109 (MQ=255)                                                                                                           gTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCta                                             <  2:290180/130‑1 (MQ=255)                                                                                                           gTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCta                                             >  1:290180/1‑130 (MQ=255)                                                                                                              ctctGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATcaaa                                                                                                                           >  2:2162117/1‑49 (MQ=255)                                                                                                              ctctGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATcaaa                                                                                                                           <  1:2162117/49‑1 (MQ=255)                                                                                                                    tggctggGTCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAg                <  2:273393/150‑1 (MQ=38)                                                                                                                    tggctggGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAg                <  1:1743543/150‑1 (MQ=40)                                                                                                                           gccggccTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTaa         >  2:2197921/1‑150 (MQ=35)                                                                                                                                ccTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATggcggc                                                               >  1:58220/1‑91 (MQ=34)                                                                                                                                ccTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATggcggc                                                               <  2:58220/91‑1 (MQ=34)                                                                                                                                ccTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCg    <  2:2199895/150‑1 (MQ=32)                                                                                                                                  tctTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTg                                       <  1:957829/113‑1 (MQ=31)                                                                                                                                  tctTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTg                                       >  2:957829/1‑113 (MQ=31)                                                                                                                                  tctTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGAt  <  1:34277/150‑1 (MQ=31)                                                                                                                                                      |                                                                                                                                  TCGGCAGCAACAGCGATACGCCGGCGAGCAGGGCCTCGAGGGTGGCGGGGCGGTGCTGGTCGAGGGACTGGTAGAGGGTTGCCAGGGGGGTGTCGGTCATCTGTCGGTTCTCTGCTGGCTGGGCCGGCCTCTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGAT  >  NC_002947/5222481‑5222759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.