| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 181,943 | C→T | 14.9% | noncoding (52/120 nt) | PP_5SB → | 5S ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 181,943 | 0 | C | T | 14.9% | 308.6 / 40.0 | 133 | noncoding (52/120 nt) | PP_5SB | 5S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base C (55/58); new base T (12/8); total (67/66) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.68e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 | |||||||||||
Only 100 of 137 total aligned reads displayed.
AAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGA > NC_002947/181795‑182092 | aaaaCCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTcagca > 2:538647/1‑150 (MQ=255)aaaaCCCCTACCTGCATGTGCAGATAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTcagca > 2:1273503/1‑150 (MQ=37) ccccTACCTGCATGTGCAGATAGGGGTTTTGCCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGa > 1:846369/1‑150 (MQ=37) cTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTg > 2:2302282/1‑146 (MQ=255) cTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTg < 1:2302282/146‑1 (MQ=255) tATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTg < 2:927575/145‑1 (MQ=255) tATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTg > 1:927575/1‑145 (MQ=255) tCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGa > 2:1483266/1‑149 (MQ=255) tCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGa < 1:1483266/149‑1 (MQ=255) aTGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGAt > 1:100098/1‑143 (MQ=255) gggTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATg > 1:971114/1‑145 (MQ=255) gggTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATg < 2:971114/145‑1 (MQ=255) ttttGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGc > 1:1635826/1‑137 (MQ=255) gTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGt > 1:1226467/1‑150 (MQ=255) gTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGt < 1:210219/150‑1 (MQ=255) tCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGtt > 1:1322938/1‑150 (MQ=255) tttAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGAt > 1:1684428/1‑123 (MQ=255) tttAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGAt < 2:1684428/123‑1 (MQ=255) tttAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTc > 2:618792/1‑150 (MQ=255) tAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGCCCATTATACACA‑GTTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTccc < 2:2177170/150‑1 (MQ=18) tAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCAtg > 2:1811103/1‑150 (MQ=255) ggAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCAtgtg > 2:443939/1‑150 (MQ=255) gAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTga < 1:1064375/150‑1 (MQ=255) tACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGt < 2:1972170/150‑1 (MQ=255) aCAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCAtgt > 2:847903/1‑143 (MQ=255) aCAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCAtgt < 1:847903/143‑1 (MQ=255) agagATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAgg < 2:1322938/150‑1 (MQ=255) agagATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAgg > 2:1562975/1‑150 (MQ=255) gCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAAAGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTTAGAGTAGGtagacgta > 2:466187/1‑143 (MQ=255) gggCACGTCATAGGGACGGGCTCGAACA‑AGACACTGCGTGACGAGCAGAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCaa < 2:255494/149‑1 (MQ=11) gCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGa > 1:1604660/1‑150 (MQ=255) aCGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCCTTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGa < 1:878811/103‑1 (MQ=255) aCGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGa > 2:878811/1‑103 (MQ=255) tCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCaa > 1:2236620/1‑150 (MQ=255) tCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCaa < 2:1415634/150‑1 (MQ=255) ccTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCaaa < 1:1273503/150‑1 (MQ=255) tAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTa > 1:218793/1‑102 (MQ=255) aCGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCTCCTGATCCCATTCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAg < 1:1811103/150‑1 (MQ=255) ggCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCAGTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGccc < 1:1651335/150‑1 (MQ=255) cAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTg > 1:1498536/1‑150 (MQ=255) cacacaGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATg < 1:236131/85‑1 (MQ=39) acaGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGtttac > 1:1895514/1‑96 (MQ=21) acaGA‑ATTCCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGa < 1:585167/80‑1 (MQ=25) aGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAt < 1:1417315/150‑1 (MQ=255) gA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑g < 1:443939/150‑1 (MQ=255) aTTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCa < 2:1584964/150‑1 (MQ=255) tCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCAtgt > 2:1067417/1‑96 (MQ=34) tGACGACCATAGAGCATTGGAACCACCTTATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGCGTTTCCCCATGTTAGAGTAGGTCATCGCCAAGATTCTAACCCAAAGCCACTGTCTGCGAT‑GCAGAGAgg < 2:846369/150‑1 (MQ=17) tGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAgg < 1:753468/150‑1 (MQ=255) tGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAgg < 2:2163615/150‑1 (MQ=255) gacgacCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAtttcgcaaaacccctacctgcgtgcgcagatag > 1:1541537‑M2/1‑117 (MQ=255) acgacCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAtttcgcaaaacccctacctgcgtgcgcagatagg > 1:140032‑M2/1‑116 (MQ=255) gatctatagagCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTGATCGTCAAGATTCAtttcgcaaaacccctacctgcgtgcgcagataggg > 1:2176353‑M2/6‑115 (MQ=255) cgacCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAtttcacaaaacccctacctgcgtgcgcagataggg > 1:106673‑M2/1‑115 (MQ=255) gacCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAtttcgcaaaacccctacctgcatgcgcagataggg > 1:1612530‑M2/1‑114 (MQ=255) gacCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAtttcgcaaaacccctacctgcatgcgcagataggg < 2:1612530‑M2/149‑36 (MQ=255) gacCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGCGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCt < 2:1514051/128‑1 (MQ=255) acCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAtttcgcaaaacccctacctgcgtgcgcagataggggt > 2:2032234‑M2/1‑113 (MQ=255) acCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAtttcgcaaaacccctacctgcgtgcgcagataggggt > 2:1804840‑M2/1‑113 (MQ=255) tAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAtttcgcaaaacccctacctgcaaacgctgataggggagatc < 2:2176353‑M2/150‑42 (MQ=255) tAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAGGGGCTTTGTc < 1:618792/150‑1 (MQ=255) agCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAGGGGCTTTGTCttt > 1:232509/1‑150 (MQ=255) cATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGt > 1:2090584/1‑89 (MQ=35) aTTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAGGGGCTTTGTCTTTTcc > 1:97648/1‑150 (MQ=255) ttGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAtttcgcaaaacccctacctgcgtgcgcagataggg < 2:1515159‑M2/137‑36 (MQ=255) ttGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAtttcgcaaaacccctacctgcgtgcgcagataggg > 1:1515159‑M2/1‑102 (MQ=255) ttGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGAt < 1:1543652/43‑1 (MQ=40) ttGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGc < 1:1693391/50‑1 (MQ=40) ttGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAGGGGCTTTGTCTTTTCCg < 1:538647/150‑1 (MQ=255) tGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAGGGGCTTTGTCTTTTCCgg < 2:203262/150‑1 (MQ=255) gAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAGGGGCTTTGTCTTTTCCGGGt < 2:359522/150‑1 (MQ=255) gAACAACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCAAAAGCCCCTGTATGCGAT‑GAAGACAGGGGCTTTGTCTTTTCCgggg > 2:1644497/1‑149 (MQ=255) accaccTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGC‑ATCGCAGACAGGGGCTTTGggtttgaatcttga < 2:1604660‑M1/150‑15 (MQ=255) ccaccTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAGGGGCTTTGTCTTTTCCGGGTTTc > 1:2286866/1‑150 (MQ=255) ccTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGa > 2:84279/1‑89 (MQ=35) tGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGcatc < 1:456606/114‑4 (MQ=255) ggATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAatat < 1:1644497/149‑1 (MQ=255) gATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAg < 1:1266233/121‑1 (MQ=255) gATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAg > 2:1266233/1‑121 (MQ=255) gATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAGGGGCTTTGCCTTTTCCGGGCTTCAatacc > 2:896415/1‑148 (MQ=255) cccatcccGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAg < 2:1667259/70‑1 (MQ=37) ccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAtttcgcaaaacccctacctgcatgcgcagatagg < 2:2320905‑M2/120‑35 (MQ=255) ccatcccGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGtt < 2:2236620/150‑1 (MQ=255) atcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAtttcacaaaacccctacctgcatgcgcagataggg < 2:1634361‑M2/119‑36 (MQ=255) atcccGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGa < 2:222783/106‑1 (MQ=255) atcccGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAg > 1:177555/1‑150 (MQ=255) tcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAtttcgcaaaacccctacctgcatgcgcagataggggtttt < 2:1496781‑M2/123‑41 (MQ=255) tcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAtttcgcaaaacccctacctgcatgcgcagataggggtttt > 1:1496781‑M2/1‑83 (MQ=255) tcccGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAATGTGGGGTTGCCCCGTGTGGGAGTAGGTTGTCGTACTGGTTGTGACCGGGTTGCCCCGTCTGCGAT‑GCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGa > 1:1112831/1‑150 (MQ=16) ccGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAAc > 2:1542561/1‑150 (MQ=255) aaCTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGGGAGTAGGTCATCGTCAAGATTCAtttcgcaaaacccctacctgcatgtgcagataggg > 2:488596‑M2/1‑78 (MQ=255) aaCTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGGGAGTAGGTCATCGTCAAGATTCAtttcgcaaaacccctacctgcatgtgcagataggg < 1:488596‑M2/113‑36 (MQ=255) aaCTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGa < 1:748579/150‑1 (MQ=255) aCTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGAt < 2:1226467/150‑1 (MQ=255) tCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAg > 1:2194068/1‑106 (MQ=255) tCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAg < 2:2194068/106‑1 (MQ=255) tCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAg < 2:687630/150‑1 (MQ=255) tCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAg < 2:896079/150‑1 (MQ=255) cagTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCAtgt < 1:19260/46‑1 (MQ=32) cagTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGGGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGa < 1:1299543/150‑1 (MQ=255) | AAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGA‑ATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCAAACCCAAAGCCCCTGTCTGCGAT‑GCAGACAGGGGCTTTGTCTTTTCCGGGTTTCAATATCGGTTAGAACTGATAGCTGA > NC_002947/181795‑182092 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |