| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,413,400 | T→A | 6.9% | intergenic (+7/+29) | PP_1234 → / ← PP_1235 | permease/AhpC/TSA family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,413,400 | 0 | T | A | 6.9% | 274.0 / 9.3 | 89 | intergenic (+7/+29) | PP_1234/PP_1235 | permease/AhpC/TSA family protein |
| Reads supporting (aligned to +/- strand): ref base T (42/40); new base A (3/3); total (46/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.22e-01 | |||||||||||
GCGATTATCTGCGCGGTGCTGCTGTTTGGCGGGCTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGCGCAGCACCCCGTCCTTGTCGATCAGGAAGGTGCTGCGGTC > NC_002947/1413253‑1413548 | gCGATTATCTGCGCGGTGCTGCTGTTTGGCGGGCTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTg < 1:1827035/150‑1 (MQ=255)gCGATTATCTGCGCGGTGCTGCTGTTTGGCGGGCTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTg > 2:703802/1‑150 (MQ=255) gcgcGGTGCTGCTGTTTGGCGGGCTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAg > 1:1516153/1‑150 (MQ=255) gTGCTGCTGTTTGGCGGGCTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGc > 2:328186/1‑150 (MQ=255) gctgctGTTTGGCGGGCTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAAtt < 1:366635/132‑1 (MQ=255) gctgctGTTTGGCGGGCTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAAtt > 2:366635/1‑132 (MQ=255) ctgctgTTTGGCGGGCTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGcccc > 2:1826603/1‑150 (MQ=255) ctgctgTTTGGCGGGCTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGcccc < 1:2161937/150‑1 (MQ=255) ctgctgTTTGGCGGGCTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGcccc < 1:1282791/150‑1 (MQ=255) tgctgTTTGGCGGGCTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCa > 1:1074225/1‑150 (MQ=255) tgctgTTTGGCGGGCTATGGGGGTTTTGGGGGATATTCTTAGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCa > 1:2312342/1‑150 (MQ=255) ctgTTTGGCGGGCTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCCTTGCAGCCCCaat < 1:1083099/150‑3 (MQ=255) ctgTTTGGCGGGCTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAAATGGGGCTGCCTTGCAGCCCCaat > 1:507449/1‑148 (MQ=255) tgTTTGGCGGGCTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAAATGGGGCTGCCTTGCAGCCCCaatt < 2:507449/150‑4 (MQ=255) ttGGCGGGCTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAAATGGGGCTGCCTTGCAGCCCCaat < 2:716464/146‑3 (MQ=255) ttGGCGGGCTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAAATGGGGCTGCCTTGCAGCCCCaat > 1:716464/1‑144 (MQ=255) ttGGCGGGCTATGGGGGTTTT‑GGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAAtt < 1:413115/150‑1 (MQ=255) tGGCGGGCTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAAtt < 1:1141654/150‑1 (MQ=255) gggCTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCAtt > 1:2015298/1‑141 (MQ=255) gggCTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCAtt < 2:2015298/141‑1 (MQ=255) gggCTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCaa < 1:328186/150‑1 (MQ=255) gggCTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCaa > 1:581456/1‑150 (MQ=255) ggCTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAg < 1:964115/150‑1 (MQ=255) cTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGcc > 1:903084/1‑150 (MQ=255) tATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCt > 2:65332/1‑150 (MQ=255) tGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTg > 2:155814/1‑150 (MQ=255) ggggTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGtt < 1:1826603/150‑1 (MQ=255) ttttGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAg < 2:2148098/150‑1 (MQ=255) ttttGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAg < 2:1074225/150‑1 (MQ=255) gggggATTTTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCtt < 1:29445/150‑1 (MQ=255) gggATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTgg < 2:837653/150‑1 (MQ=255) ggATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTCCAAGCCTTGAACAAGGCTTgaa > 1:656326/1‑148 (MQ=255) tatTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTgaaatt < 1:1189288/150‑6 (MQ=255) tcGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCa < 1:772613/150‑1 (MQ=255) ccATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATATAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATa > 1:41508/1‑150 (MQ=255) tCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCaa > 1:516800/1‑116 (MQ=255) tCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCaa < 2:516800/116‑1 (MQ=255) cccGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGc < 2:1516153/150‑1 (MQ=255) cGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGc < 2:127165/115‑1 (MQ=255) cGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGc > 1:127165/1‑115 (MQ=255) cGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTgg > 1:1936466/1‑131 (MQ=255) cGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTgg < 2:1936466/131‑1 (MQ=255) gACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAAATGGGGCTGCCTTGCAGCCCCaat > 1:973773/1‑95 (MQ=38) gACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAAATGGGGCTGCCTTGCAGCCCCaat < 2:973773/97‑3 (MQ=38) tGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCAtt < 2:2028813/92‑1 (MQ=255) tGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCAtt > 1:2028813/1‑92 (MQ=255) tGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCgg > 2:1706368/1‑150 (MQ=255) tGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGAGTGGGCGGCCGCCAATACGGCATCCACATGCCCgg < 1:1133441/150‑1 (MQ=255) tCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAAttt < 1:1295530/95‑1 (MQ=255) tCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAAttt > 2:1295530/1‑95 (MQ=255) tCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCACCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCa > 1:318470/1‑150 (MQ=255) aaGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACt > 1:374536/1‑150 (MQ=255) aGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATc > 1:1451748/1‑133 (MQ=255) aGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATc < 2:1451748/133‑1 (MQ=255) ggCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACgg < 2:926521/128‑1 (MQ=255) ggCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACgg > 1:926521/1‑128 (MQ=255) gATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCt > 1:1643766/1‑88 (MQ=255) gATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCt < 2:1643766/88‑1 (MQ=255) gATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGggcggc < 2:1100881/107‑1 (MQ=255) gATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGggcggc > 1:1100881/1‑107 (MQ=255) gTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTc < 1:703802/150‑1 (MQ=255) ggCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCt > 1:714504/1‑150 (MQ=255) gCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCa < 1:604817/112‑1 (MQ=255) gCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCa > 2:604817/1‑112 (MQ=255) cccAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACTCCACGCCATTCCTgg < 2:581456/150‑1 (MQ=255) cccAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTgg > 1:737858/1‑150 (MQ=255) ccAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGgc < 1:738966/150‑1 (MQ=255) cAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGgcg > 1:501903/1‑150 (MQ=255) aaGCAGGAGCCTAGCGTTTCACCGATGCTTTGACTGTAACTAGCGCTCGAATTCCATCGGAATCAATGTTGATCCTGGGTCAAGGCTTGGCCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGgcgc > 1:1212273/1‑150 (MQ=255) tAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTggg > 2:673775/1‑80 (MQ=255) tAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTggg < 1:673775/80‑1 (MQ=255) tAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATc < 2:1096675/99‑1 (MQ=255) tAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATc > 1:1096675/1‑99 (MQ=255) tAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGCGCAGCACCCCGTc > 1:1053042/1‑150 (MQ=255) gCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCCTTAAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGGACTTTCACGCCACGCCATGCCTGGCGCAGCACCGCGTCCt > 1:836938/1‑150 (MQ=255) gCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGAACAAGGCTTgaa < 1:1035785/78‑3 (MQ=39) gCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGAACAAGGCTTgaa > 2:1035785/1‑76 (MQ=39) tttCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGCGCAGCACCCCGTCCTTGt < 2:1053042/150‑1 (MQ=255) tttCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGCCCAGCACCCCGTCCTTGt > 2:1301922/1‑150 (MQ=255) ttCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGCGCAGCACCCCGTCCTTGTc < 2:714504/150‑1 (MQ=255) ccGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGCGCAGCACCCCGTCCTTGTCGATc < 1:1706368/150‑1 (MQ=255) cgctGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGCGCAGCAc < 2:1538825/130‑1 (MQ=255) cGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGCGCAGCAc > 1:1538825/1‑133 (MQ=255) gATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGCGCAGCACCCCGTCCTTGTCGATCAg > 1:600089/1‑150 (MQ=255) cTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTTAAGGCTTGGGCGGCCGCCAATACGGCATCCACATTCCCGGGCACTTTCACGCCACAAGAGCCCGGGCGCAGCACCCCGTCCTTGTCGATCAGGAAg > 1:121957/1‑150 (MQ=255) tttGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTATGTAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGCGCAGCACCCCGTCCTTGTCGATCAGGAAgg < 1:2261789/150‑1 (MQ=255) ttGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGcc > 1:1315727/1‑89 (MQ=255) ttGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGcc < 2:1315727/89‑1 (MQ=255) tGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGCGCAGCACCCCGTCCTTGTCGATCAGGAAGGtgctgc > 1:821907/1‑150 (MQ=255) aaTTGGGGCTGCAAGGCAGCGCCATTCAATTTAAAGCCTTGTTCAGGACTTGGGCGGCCGGCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGCGCAGCAGCGCGTCCTTGTCGATCAGGAAGGTGCTGCggg > 2:949766/1‑149 (MQ=255) aTTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGCGCAGCAACCCGTCCTTGTCGATCAGGAAGGTGCTGCGGTc > 2:1308755/1‑150 (MQ=255) | GCGATTATCTGCGCGGTGCTGCTGTTTGGCGGGCTATGGGGGTTTTGGGGGATATTCTTCGCCATCCCGCTGGCGACGCTGATCAAGGCCGTGCTGGATGCGTGGCCCAAGCAGGAGCCTAGCGTTTCACCGATGCTTTGAATGTAATTGGGGCTGCAAGGCAGCCCCATTCAATTTCAAGCCTTGTTCAAGGCTTGGGCGGCCGCCAATACGGCATCCACATGCCCGGGCACTTTCACGCCACGCCATTCCTGGCGCAGCACCCCGTCCTTGTCGATCAGGAAGGTGCTGCGGTC > NC_002947/1413253‑1413548 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |