| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,551,364 | G→A | 5.3% | intergenic (+81/+45) | groL → / ← pykA | chaperonin GroEL/pyruvate kinase II |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,551,364 | 0 | G | A | 5.3% | 344.9 / 6.6 | 115 | intergenic (+81/+45) | groL/pykA | chaperonin GroEL/pyruvate kinase II |
| Reads supporting (aligned to +/- strand): ref base G (52/54); new base A (2/4); total (55/60) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.80e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.79e-01 | |||||||||||
Only 100 of 123 total aligned reads displayed.
CCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCACCCTTGGTCAGGATCACCCAGT > NC_002947/1551215‑1551503 | ccGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCg < 2:736085/150‑1 (MQ=255) ggAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCCTGATGTAAGCAAGAGAACCTGCCCTGCACCATCAAAACACACCGGTTCGCGAGAGCCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCgca > 1:522621/1‑150 (MQ=255) ggAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCgca < 1:2207887/150‑1 (MQ=255) ggAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCgca > 1:2208376/1‑150 (MQ=255) gAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCCGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCgcag < 2:1254319/150‑1 (MQ=255) gACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGcac < 2:1454351/150‑1 (MQ=255) aaGCCAGCTGCTGACATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATAATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACaac > 2:1485562/1‑149 (MQ=255) aGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAgg < 2:2299991/150‑1 (MQ=255) ccAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCt > 1:2177743/1‑150 (MQ=255) ctgGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGTCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTg < 1:368659/150‑1 (MQ=255) tgGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGa < 1:1920563/150‑1 (MQ=255) tgGCATGCCTGATATGGCTGGCATGTGTGGCATCGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGCTCGCGAGAACCGGGGCTTTTTTATTGCGGTCGGCGCCACCTCGCAGCACAAGCGT‑‑‑GC‑GCttta < 2:272664/150‑3 (MQ=255) tGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCCGTGCGGTGGCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCtt < 2:1230381/150‑1 (MQ=255) tGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCtt < 2:900705/150‑1 (MQ=255) tggtggagcaaggtgactgggtgatcctgaccaagggtgacagctaccacaccatcggtggcaccaatggcatgaagatcctgcacgtcggtgatccgctggtcggttgatccactcgtTTCACAGCACAAGGCT‑‑‑GC‑GCtt < 2:1322878‑M1/22‑1 (MQ=255) tggtggagcaaggtgactgggtgatcctgaccaagggtgacagctaccacaccatcggtggcaccaatggcatgaagatcctgcacgtcggtgatccgctggtcggttgatccactcgtTTCACAGCACAAGGCT‑‑‑GC‑GCtt > 1:1322878‑M1/120‑141 (MQ=255) ccTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCgca > 2:2166071/1‑125 (MQ=255) ccTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCgca < 1:2166071/125‑1 (MQ=255) tGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGc > 1:1218654/1‑150 (MQ=255) caaggtgactgggtgatcctgaccaagggtgacagctaccacaccatcggtggcaccaatggcatgaagatcctgcacgtcggtgatccgctggtcggttgatccactcgtTTCACAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTtgt > 2:2099233‑M1/112‑142 (MQ=255) caaggtgactgggtgatcctgaccaagggtgacagctaccacaccatcggtggcaccaatggcatgaagatcctgcacgtcggtgatccgctggtcggttgatccactcgtTTCACAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTtgt < 1:2099233‑M1/31‑1 (MQ=255) gcatgggtggcatgggCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCtg > 1:1838615/1‑141 (MQ=255) gcatgggtggcatgggCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCtg < 2:1838615/141‑1 (MQ=255) catgggtggcatgggCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGt < 2:1218654/150‑1 (MQ=255) catgggtggcatgggCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCCACATCAGGGGCTTTTTTATTGCTGGCGTGGCCTCTTCTCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGt < 1:870884/150‑1 (MQ=255) tgggtggcatgggCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTgg < 2:1151001/150‑1 (MQ=255) ggtgatcctgaccaagggtgacagctaccacaccatcggtggcaccaatggcatgaagatcctgcacgtcggtgatccgctggtcggttgatccactcgtTTCGCAGCACaa < 1:1124183‑M1/12‑1 (MQ=255) ggtgatcctgaccaagggtgacagctaccacaccatcggtggcaccaatggcatgaagatcctgcacgtcggtgatccgctggtcggttgatccactcgtTTCGCAGCACaa > 2:1124183‑M1/101‑112 (MQ=255) gcatgggCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAAc > 1:1386427/1‑150 (MQ=255) atgggCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCg > 1:686059/1‑150 (MQ=255) gTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCAcc > 2:2272817/1‑150 (MQ=255) acagctaccacaccatcggtggcaccaatggcatgaagatcctgcacgtcggtgatccgctggtcggttgatccactcgtTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAg < 2:2229423‑M1/44‑1 (MQ=255) gccagccTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACg > 2:1891032/1‑150 (MQ=255) gccagccTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACg > 1:1711976/1‑150 (MQ=255) cagccTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTg > 2:1509195/1‑150 (MQ=255) agccTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCtg > 1:107949/1‑109 (MQ=255) agccTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCtg < 2:107949/109‑1 (MQ=255) cccccTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGt < 1:1396222/111‑1 (MQ=255) cccccTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCtt > 1:2188090/1‑150 (MQ=255) ccTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCa > 1:640057/1‑140 (MQ=255) ccTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCa < 2:640057/140‑1 (MQ=255) cTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATg < 2:1386427/150‑1 (MQ=255) gCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGCTAAACGTACCAACGGATCACCGACGTGCAGGATCTTCATGcc > 2:1133109/1‑150 (MQ=255) cATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGaaa < 2:2270892/96‑1 (MQ=255) cATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTg < 1:1891032/150‑1 (MQ=255) cATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCCTGAGCCTTGTGCTGTGaaa > 1:2270892/1‑96 (MQ=255) aTCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTGTATTGCTGTCGGGACCTCGTAGCAGCACAAGGCT‑‑‑GG‑GCTTGAGCCTTGTGCTGTGGAAAGATTGGGTCAACCGACGAGCGAATAACAGACATGCAGGAGCTTCATGCCATTgg > 2:648878/1‑150 (MQ=255) tCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGGTCTTCATGCGATTgtt > 1:965971/1‑148 (MQ=255) tCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGt < 1:1860969/150‑1 (MQ=255) tCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGt > 1:737402/1‑150 (MQ=255) tCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGt > 1:2307248/1‑150 (MQ=255) aaaaaGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGt < 1:831854/97‑1 (MQ=255) aaaaaGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGt > 2:831854/1‑97 (MQ=255) aaaaaGCCCCGGTTCGCGAGAACCCGCTACGTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGc < 1:1170693/150‑1 (MQ=255) aaaaGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGc > 2:1569629/1‑140 (MQ=255) aaaaGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGc < 1:1569629/140‑1 (MQ=255) aaaGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTgg < 1:339717/97‑1 (MQ=255) aaaGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTgg > 2:339717/1‑97 (MQ=255) aaGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCAc < 2:1711976/150‑1 (MQ=255) gCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTTAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCACGCCATTGGTGCCACCg < 2:1169167/150‑1 (MQ=255) gCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCg > 2:1760535/1‑150 (MQ=255) ccccGGTTCTCGCGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCtgt > 1:62525/1‑82 (MQ=255) ccccGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCTGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGa > 1:1650041/1‑150 (MQ=255) ccccGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCAt > 1:2291596/1‑133 (MQ=255) cccGGTTCTCGCGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGc < 2:1953924/71‑1 (MQ=38) cccGGTTCTCGCGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGc > 1:1953924/1‑71 (MQ=255) ccGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCCGCCACCGTAC‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATg > 2:1374825/1‑150 (MQ=255) ccGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATg > 1:2094644/1‑150 (MQ=255) ccGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATg > 2:1328730/1‑150 (MQ=255) cGGTTCGCGAGAACCGGGGCTTTTTTCTGTGAGGCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATgg > 1:1814101/1‑150 (MQ=255) cGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATgg < 2:1650041/150‑1 (MQ=255) ggTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGgt < 1:1509195/150‑1 (MQ=255) gTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGaaa < 1:518205/81‑1 (MQ=255) gTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGaaa > 2:518205/1‑81 (MQ=255) gTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGgtg < 2:522621/150‑1 (MQ=255) aaCCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTg < 2:1396892/150‑1 (MQ=255) cGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGCGTGGATCAACCGACCCGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGCGGTAGCTGTcc > 1:1540809/1‑149 (MQ=255) ggCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCAccc > 2:833347/1‑150 (MQ=255) ggCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCAccc < 2:686059/150‑1 (MQ=255) gCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCACCCt > 2:2039235/1‑150 (MQ=255) ttttttATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCACCCCTg < 1:1760535/150‑1 (MQ=255) ttATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCACCCTTGGTCa < 2:2188090/150‑1 (MQ=255) tATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCACCCTTGGTCAg > 2:1500946/1‑150 (MQ=255) cTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCACCCTTGGTCAGGATCa < 1:1500946/150‑1 (MQ=255) cTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCACCCTTGGTCAGGATCa < 2:2307248/150‑1 (MQ=255) atccactcgtTTCACAGCACAAGGCTCAAGC‑GC‑‑‑AGCCTTGTGCTGCGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCACCCTTGGTCAGGATCAccc < 1:1462484‑M1/140‑1 (MQ=255) tccactcgtTTCACAGCACAAGGCT‑‑‑CAAGCGC‑AGCCTTGTGCTGCGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCAc < 1:1275747‑M1/101‑1 (MQ=255) cGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCACCCTTGGTCAGGATCACCCa < 2:2094644/150‑1 (MQ=255) cGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCCTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGCGTGGTAGCTGTCACCCTTGGTCAGGATCACCCa < 1:1485562/150‑1 (MQ=255) ggggCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCACCCt > 2:2298787/1‑133 (MQ=255) ggggCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCACCCt < 1:2298787/133‑1 (MQ=255) ggggCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCACCCTTGATCAGGATCACCCAg > 2:1887741/1‑150 (MQ=255) gggCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGgt < 2:577476/115‑1 (MQ=255) gggCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGtgtg > 1:779489/1‑118 (MQ=255) gggCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGtgtg < 2:779489/118‑1 (MQ=255) gggCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCACCCTTGGTCAGGATCACCCAGt > 2:209008/1‑150 (MQ=255) tctTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGAc > 2:1127241/1‑74 (MQ=255) tctTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGAc < 1:1127241/74‑1 (MQ=255) TTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCACCCTTGGTCAgg < 2:574002‑M1/133‑1 (MQ=255) TTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCACCCTTGGTCAgg > 1:574002‑M1/1‑133 (MQ=255) | CCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCT‑‑‑GC‑GCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCACCCTTGGTCAGGATCACCCAGT > NC_002947/1551215‑1551503 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |