| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,628,404 | G→A | 5.9% | A159T (GCC→ACC) | mucA → | sigma factor AlgU negative regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,628,404 | 0 | G | A | 5.9% | 243.4 / 3.1 | 83 | A159T (GCC→ACC) | mucA | sigma factor AlgU negative regulator |
| Reads supporting (aligned to +/- strand): ref base G (39/39); new base A (3/2); total (42/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.39e-01 | |||||||||||
ACGGGTGCAGAGCTTGCTGCCCAGCAGCCTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAACCGTTAAGTAAGGAGGATCATGCGCGCGCTACCTCTCT > NC_002947/1628260‑1628551 | aCGGGTGCAGGGCTTGCTGCCCAGCAGCCTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCGCGGCGGTTTTGGCAGGCTATAGGGAAAGCAGTGAGCACCCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGc < 2:970817/150‑1 (MQ=255) cGGGTGCAGAGCTTGCTGACCAGACGCCTGTCAACCAGGTCTTGAGTTTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTAAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCt < 2:2008336/150‑1 (MQ=255) tGCAGAGCTTGCTGCCCAGCAGCCTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGCGCCACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGa < 1:59762/150‑1 (MQ=255) tgctgcCCAGCAGCCTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCt < 1:1176264/150‑1 (MQ=255) ccAGCAGCCTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAgg < 2:1772086/150‑1 (MQ=255) ccAGCAGCCTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAgg < 1:546174/150‑1 (MQ=255) ccAGCAGCCTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCCATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAgg > 1:1725471/1‑150 (MQ=255) cagcagCCTGTCCAACAGGGCCAGCGCGTGCCACAAGCGCAAGGCCCGGCCGTTGTGGCAGGCTATAGTGACAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGCCTGGGATCAGCGTCTGCCAGGc > 2:2271/1‑150 (MQ=255) agcagcCTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGCATTGCTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCt > 1:1813716/1‑150 (MQ=255) ttCCAAGAGGGCCTGAGTTTGCCACAAGCGCAAGGCCCGGCCGTTGTGGCAGGCTATAGTTAAAGCAGTGAGTGGCCGGCCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTgcgc < 1:1104321/149‑1 (MQ=255) aaCAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGc > 1:288739/1‑150 (MQ=255) tccgatctgtgCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGccc < 1:2290032/143‑1 (MQ=255) ccTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCa > 1:414997/1‑150 (MQ=255) cTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAg < 2:180156/127‑1 (MQ=255) cTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAg > 1:180156/1‑127 (MQ=255) cTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGc > 1:1470071/1‑129 (MQ=255) cTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGc < 2:1470071/129‑1 (MQ=255) cTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAg > 1:1726495/1‑150 (MQ=255) cTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAg > 2:236950/1‑150 (MQ=255) tgCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTg > 2:234604/1‑150 (MQ=255) gCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTgc > 2:204510/1‑150 (MQ=255) ccACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAACGCAGTGCGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTgcg < 2:1430345/150‑1 (MQ=255) aaGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCa > 2:1373786/1‑150 (MQ=255) aGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCaa < 2:1792291/150‑1 (MQ=255) cgcAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGCCCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAgg < 1:1675210/150‑1 (MQ=255) gcAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGTGATCAGCGTCTGCCAGGCTAc < 1:1646398/115‑1 (MQ=255) gcAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGTGATCAGCGTCTGCCAGGCTAc > 2:1646398/1‑115 (MQ=255) cccGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGATCGGTTGGGATCAGCGTCTGCCAGGCTACCTGCGCCACAATGCCCAGGAATCTGCGCGCAGGGGCAATGa > 1:2263057/1‑150 (MQ=255) ccGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGaa > 2:909015/1‑150 (MQ=255) ggCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAAc > 2:20211/1‑150 (MQ=255) ttttGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTa > 1:1392383/1‑100 (MQ=255) ttttGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTa < 2:1392383/100‑1 (MQ=255) ttGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTg < 1:2064404/150‑1 (MQ=255) cAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGcc < 1:1801837/148‑1 (MQ=255) cAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGcc > 2:1801837/1‑148 (MQ=255) cAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGt > 2:18768/1‑150 (MQ=255) ggCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAGCCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTAt < 1:1363912/150‑1 (MQ=255) gCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGAt < 1:2327241/74‑1 (MQ=255) gCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGAt > 2:2327241/1‑74 (MQ=255) gCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATg < 2:414997/150‑1 (MQ=255) cTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGc < 2:1725471/150‑1 (MQ=255) gTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGcc < 2:653637/101‑1 (MQ=255) gTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCCACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCcgcg > 2:2245103/1‑150 (MQ=255) gTGAAAGCAGTGAGCAACCGACCGGGCAAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGcc > 1:653637/1‑101 (MQ=255) aaaGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGcgccg > 2:1467186/1‑150 (MQ=255) aaaGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGACCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGcgccg > 1:2225233/1‑150 (MQ=255) aaGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGcgccgc < 1:1373786/150‑1 (MQ=255) gCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCa < 1:598878/150‑1 (MQ=255) cAGTGAGCAACCGACGGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAACGGCTGCCAGGCTACCTGACGCAGCGTGCCCAGGAATCTGCGCTCCAGGGCGCTGAAATCGCGTTGCCGTATGCCCGCGCCGCCAg > 2:301539/1‑150 (MQ=255) cAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAg < 2:1726495/150‑1 (MQ=255) tGAGCAACCGACCGGGCCAATGGTCAATGGAGTGCTGCAGAACCAAGCTAGATGGGAGCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCACCCt < 2:62744/150‑1 (MQ=255) gAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTg < 1:234604/150‑1 (MQ=255) aGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGACCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTgcgc < 2:1292928/102‑1 (MQ=255) aGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGACCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTgcgc < 2:129712/102‑1 (MQ=255) aGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGACCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTgcgc > 1:129712/1‑102 (MQ=255) aGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGACCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTgcgc > 1:1292928/1‑102 (MQ=255) cgaccgGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCCACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAAcc < 1:2245103/150‑1 (MQ=255) gaccgGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAACCg > 2:2224891/1‑150 (MQ=255) accgGGCCAAAGGCCAACGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCCACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAACGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAACCGt < 1:1184082/150‑1 (MQ=255) cgGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCCGCCTGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAACCGTta > 2:1135284/1‑150 (MQ=255) ccaatggccaatggCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGc > 2:1406707/1‑112 (MQ=255) ccaatggccaatggCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGc < 1:1406707/112‑1 (MQ=255) aatggccaatggcGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAACCGTtaagtaag < 1:1537126/150‑1 (MQ=255) atagccaatggaGTACAGCAGAACCAGGCGGGCTGAGATCAGCGTCAGCCAGGCTACCTGCGCCAACATGCAAAGCAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAACCGTTAAGTAagg > 2:462378/4‑150 (MQ=255) tggccaatggcGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGCAAACCCTTAAGTAagga < 2:1159443/150‑1 (MQ=255) tggccaatggcGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAACCGTTAAGTAagga > 1:622477/1‑150 (MQ=255) ggccaatggcGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAACCGtt > 2:298021/1‑140 (MQ=255) ggccaatggcGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAACCGtt < 1:298021/140‑1 (MQ=255) ggccaatggcGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAACCGTTAAGTAaggag > 2:857334/1‑150 (MQ=255) caatggcGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAACCGTTAAGTAAGGAGGAt > 2:1637280/1‑150 (MQ=255) caatggcGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAACCGTTAAGTAAGGAGGAt > 1:1679747/1‑150 (MQ=255) gTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAACCGTTAAGTAAGGAGGATCATgcgc < 2:2265519/150‑1 (MQ=255) tgcAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAATCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAACCGTTAAGTAAGGAGGATCATgcgcgcgc < 2:1679747/150‑1 (MQ=255) tgcAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAACCGTTAAGTAAGGAGGATCATgcgcgcgc > 2:1125713/1‑150 (MQ=255) gcAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAAcc < 1:1041456/122‑1 (MQ=255) gcAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAAcc > 2:1041456/1‑122 (MQ=255) cAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAAcc < 2:2254712/121‑1 (MQ=255) cAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAAcc > 1:2254712/1‑121 (MQ=255) aaCCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAACCGTTAAGTAAGGAGGATCATGCGCGCGCTACct < 1:1481666/150‑1 (MQ=255) aaCCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATCGCCGTATGCCCGCGCCGCCAGCCTGGAAAACCGTTAAGTAAGGAGTATCATGCGCGCGCTACct > 2:1818590/1‑150 (MQ=255) ccAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAACCGTTAAGTAAGGAGGATCATGCGCGCGCTACctct > 2:638212/1‑150 (MQ=255) ccAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAACCGTTAAGTAAGGAGGATCATGCGCGCGCTACctct > 2:967925/1‑150 (MQ=255) aGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAACCGTTAAGTAAGGAGGATCATGCGCGCGCTACctctct < 1:1094007/150‑1 (MQ=255) | ACGGGTGCAGAGCTTGCTGCCCAGCAGCCTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAATGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACCTGCGCCAGCATGCCCAGGAATCTGCGCTCAAGGGCACTGAAACCGCATTGCCGTATGCCCGCGCCGCCAGCCTGGAAAACCGTTAAGTAAGGAGGATCATGCGCGCGCTACCTCTCT > NC_002947/1628260‑1628551 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |