| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,639,638 | C→T | 6.0% | intergenic (‑186/‑125) | czcR‑III ← / → PP_1439 | response regulator/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,639,638 | 0 | C | T | 6.0% | 281.4 / 4.1 | 94 | intergenic (‑186/‑125) | czcR‑III/PP_1439 | response regulator/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (45/43); new base T (3/3); total (48/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
CCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAATACCTGCTGT > NC_002947/1639489‑1639787 | cccTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTAcc > 1:2323383/1‑150 (MQ=255) tGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCcgc > 2:1789991/1‑150 (MQ=255) tAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTAGCGTGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCcgcgg > 1:1191838/1‑149 (MQ=255) tGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAaga < 1:1576688/150‑1 (MQ=255) cATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGc < 1:660028/150‑1 (MQ=255) atcaggatcaggCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGGGCAGATAATTGATTTGTAATTCGGCTGTTATCTGGCTGTTTGTGCGGGCCTCTTCGCGAGT‑CAACCCGCGCCTGTAGGAACGGGTTTACTCGCGAAGAGGcc < 2:1056895/150‑1 (MQ=255) tCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAagag > 1:1388471/1‑146 (MQ=255) tCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAagag < 2:1388471/146‑1 (MQ=255) gTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACa < 2:1890728/150‑1 (MQ=255) cAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGt < 1:1988192/150‑1 (MQ=255) aaGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTc < 1:1583537/150‑1 (MQ=255) aGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTcc < 2:1867786/150‑1 (MQ=255) ccccAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTGCCCGCGAAGAGGCCCGAACAGTCcacac > 2:2192223/1‑150 (MQ=255) cccAATGTTACTGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAAAGGTCcaccca > 2:1626216/1‑150 (MQ=255) cccAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCcacaca > 2:2334997/1‑150 (MQ=255) cccAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTAACCATAGGGAGTGATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGCAGAGGCCCGAACAGTCcacaca > 2:1374824/1‑150 (MQ=37) cAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAg > 1:1284442/1‑150 (MQ=255) ctcGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTCTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCcaca < 1:2260780/148‑1 (MQ=255) gCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGc < 1:1789991/150‑1 (MQ=255) gCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGc < 2:1968983/150‑1 (MQ=255) cATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGccc < 2:750121/123‑1 (MQ=255) cATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGccc > 1:750121/1‑123 (MQ=255) aaaaGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGaa > 1:2317088/1‑120 (MQ=255) aaaaGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGaa < 2:2317088/120‑1 (MQ=255) aaaaGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTg < 2:1607952/150‑1 (MQ=255) aaaaGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAATCAGAAGAGCACAGGT‑GGAACGGGTTTACCCGCGACCAGACACGACCATGCCATACAAGGCCACAATGCAGGACTg > 1:405262/1‑150 (MQ=255) ggCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTGGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAAt > 1:430148/1‑150 (MQ=255) tGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGCACAGTCCACACAAGGCCACCTTGCAGGACTGTAATcccc > 2:862091/1‑150 (MQ=255) gCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGcc > 2:2248133/1‑102 (MQ=255) gCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGcc < 1:2248133/102‑1 (MQ=255) cAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTCATCACCGCCTccc < 2:1259008/150‑3 (MQ=255) aGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGTGCCTCTTCGCGCGT‑AAACCCTCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCAcc > 2:616698/1‑150 (MQ=255) aaCGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTGGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGc < 2:430148/150‑1 (MQ=255) ggATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGt > 2:1725447/1‑150 (MQ=255) gATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGtt > 2:605577/1‑150 (MQ=255) tttGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGa < 1:1260051/121‑1 (MQ=255) tttGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGa > 2:1260051/1‑121 (MQ=255) ttGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTagc < 1:1725447/150‑1 (MQ=255) tAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTagccag > 2:1330082/1‑150 (MQ=255) tgctgTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCg > 1:1475494/1‑150 (MQ=255) gTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAg > 1:1444377/1‑150 (MQ=255) ttATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGtt < 2:2047413/133‑1 (MQ=255) ttATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTACAGGACTGTAATCCCCGCCTCACCTTGCCGtt > 1:2047413/1‑133 (MQ=255) ggCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGcc > 1:2223575/1‑150 (MQ=255) tgtctgtTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAg > 1:142614/1‑83 (MQ=255) tgtctgtTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAg < 2:142614/83‑1 (MQ=255) gtctgtTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGccc < 1:684967/66‑1 (MQ=255) gtctgtTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGccc > 2:684967/1‑66 (MQ=255) tctgtTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTc < 1:2214258/150‑1 (MQ=255) tctgtTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTc > 1:2212563/1‑150 (MQ=255) ttcaagCCTCCTTGCTAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCTACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGAt > 2:90979/6‑150 (MQ=255) ttCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGAt > 2:1325476/1‑150 (MQ=255) gggCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCgg < 1:1330082/150‑1 (MQ=255) ccTCTTCGCGGGT‑AAACCCGTTCCTACAGGCGCGGGTTTACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGtta > 2:1797872/1‑150 (MQ=25) ccTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCTACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGtta < 1:90979/150‑1 (MQ=255) ccTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGtta < 1:1325476/150‑1 (MQ=255) ctctTCGCGGGT‑AAACCCGTTCCTACAGGCGCGGGTTTACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttat > 2:2032879/1‑150 (MQ=25) ctctTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttat < 2:2223575/150‑1 (MQ=255) tctTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGttatt > 2:1697139/1‑150 (MQ=255) ttCGCGGGT‑AAACCCGTTCCTACAGGCGCGGGTTTACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCt > 2:1309871/1‑101 (MQ=14) ttCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTAc > 1:1010060/1‑150 (MQ=255) cgcgAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCGGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGa < 2:198389/150‑1 (MQ=255) gcgAGT‑ACACCCGCGCCTGTAGGAACGGGTTTACCCGTGAAGATCCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAg < 1:1569763/150‑1 (MQ=255) gcgAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAg > 1:1343709/1‑150 (MQ=255) gcgAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAg > 2:753430/1‑150 (MQ=255) gcgAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAg < 2:1284442/150‑1 (MQ=255) gcgAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCACGCCTCATCTTGCCGTTTGCCATCCCTCGCTAGGATGGCCGTGACTGATCGGttattaaggg < 2:1248528/150‑5 (MQ=255) gcgACT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAg < 1:1626216/150‑1 (MQ=255) cgAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAgg < 2:2212563/150‑1 (MQ=255) gAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCgg > 2:1832807/1‑138 (MQ=255) gAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCgg < 1:1832807/138‑1 (MQ=255) aaaCCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCAc < 2:338603/90‑1 (MQ=255) aaaCCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCAc > 1:338603/1‑90 (MQ=255) aCCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAacac > 1:1870677/1‑150 (MQ=255) cccGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACg > 1:276185/1‑150 (MQ=255) cccGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACg > 1:518618/1‑150 (MQ=255) cctcaccTGGAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGa < 1:2192223/145‑1 (MQ=255) ccGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCgtgt < 2:1451490/122‑1 (MQ=255) ccGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCgtgt > 1:1451490/1‑122 (MQ=255) ccGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGa < 2:1870677/150‑1 (MQ=255) ccTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGTAc < 1:2334997/150‑1 (MQ=255) cTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAAcc > 2:998066/1‑150 (MQ=255) tGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCt < 2:2323383/150‑1 (MQ=255) tAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGa < 2:405262/150‑1 (MQ=255) gAACGGGTTTACCCGCGACGAGGCTCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCa > 2:1959725/1‑150 (MQ=255) gAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGt > 1:882465/1‑119 (MQ=255) gAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGt < 2:882465/119‑1 (MQ=255) gtgTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAATa > 1:2088846/3‑150 (MQ=255) ggTTTCCTCCCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTAATCGGTTATTCCGAGGCAAACACGATGAACCTGACCAAATAc < 1:537363/150‑1 (MQ=255) gTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAAc < 1:856029/137‑1 (MQ=255) gTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAAc < 1:1993627/137‑1 (MQ=255) gTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAAc > 2:1993627/1‑137 (MQ=255) gTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAAc > 2:856029/1‑137 (MQ=255) tttACTCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAATACct < 1:2032879/150‑1 (MQ=255) tttACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGATTGTATTTCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAATACct > 1:1333919/1‑150 (MQ=255) ccGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAATACCTGCTGt < 1:1697139/150‑1 (MQ=255) ccGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAATACCTGCTGt > 2:1756765/1‑150 (MQ=255) | CCCTGTAGTGACATCAGGGTCAAGCGCCCCAATGTTACGGCATGAAAAAAGGCCTGCGGTGCAGATAACGGATTTGTAATTCTGCTGTTATCTGGCTGTCTGTTCGGGCCTCTTCGCGAGT‑AAACCCGCGCCTGTAGGAACGGGTTTACCCGCGAAGAGGCCCGAACAGTCCACACAAGGCCACATTGCAGGACTGTAATCCCCGCCTCACCTTGCCGTTAGCCAGCCCTCGCTAGGATGGCCGTGTCTGATCGGTTATTACGAGGCAAACACGATGAACCTGACCAAATACCTGCTGT > NC_002947/1639489‑1639787 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |