| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 196,390 | T→C | 27.9% | D632D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 196,390 | 0 | T | C | 27.9% | 201.1 / 80.5 | 119 | D632D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (42/43); new base C (18/15); total (61/58) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.84e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.62e-01 | |||||||||||
Only 100 of 122 total aligned reads displayed.
ACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACC > NC_002947/196241‑196534 | aCCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGAt < 1:151320/150‑1 (MQ=35) tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 2:1587704/150‑1 (MQ=35) tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTcc < 1:1621566/150‑1 (MQ=11) gACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 2:2257051/150‑1 (MQ=35) gACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 1:729883/150‑1 (MQ=35) cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGa < 1:1224306/150‑1 (MQ=35) ggCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGAc > 2:457375/1‑150 (MQ=255) aGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCg < 2:2138590/150‑1 (MQ=11) cccGTCGGTCACCGAAGGCGGCGTGATCACTTAAACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGc < 2:964780/150‑1 (MQ=11) gTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGaa > 2:2051855/1‑150 (MQ=35) tCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAAt < 2:837917/150‑1 (MQ=11) aCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg > 1:1128266/1‑138 (MQ=37) aCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg < 2:1128266/138‑1 (MQ=37) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGCGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCCATTGCCAGACCCCGGCGAATGACGTCTa > 1:489172/1‑150 (MQ=255) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg > 1:2258225/1‑136 (MQ=37) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg < 2:2258225/136‑1 (MQ=37) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa > 1:1338751/1‑150 (MQ=35) aaGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTaca > 2:833999/1‑150 (MQ=35) ggcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTc > 1:1767226/1‑120 (MQ=38) ggcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTc < 2:1767226/120‑1 (MQ=38) ggcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGACTAATGAGGTCTACaacaac > 2:1115750/1‑150 (MQ=255) ggcgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACaacaac > 1:490626/1‑150 (MQ=255) gTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCGGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGt > 2:1685351/1‑150 (MQ=11) gTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGt < 2:719737/150‑1 (MQ=255) ttaTCACTTACACCGTGACCCTTAGCAATCCTGCTCAGACGCCGGTGACAGTGACCCTGTCAAACGGCCAAACCATTACCGTTG‑AAGCCGGTAATACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 2:1784152/148‑1 (MQ=11) tGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 1:1114498/150‑1 (MQ=34) tGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTa < 2:2245655/139‑1 (MQ=11) tGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 1:2122583/150‑1 (MQ=11) tCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 2:412570/150‑1 (MQ=35) tCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa > 1:1964273/1‑150 (MQ=11) ttACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt > 1:1882004/1‑150 (MQ=35) acacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa < 1:457375/150‑1 (MQ=255) tccttGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgc > 1:672242/5‑149 (MQ=11) acCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgt < 1:100848/150‑1 (MQ=37) acCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCATGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgc > 1:516538/1‑149 (MQ=11) ccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCAt < 2:1338751/150‑1 (MQ=39) ccTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 2:490963/1‑131 (MQ=11) ccTGAGCAACCCTGCCCAGACGCCGGTGACAATGCAGCTTGCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCAt > 1:1614775/1‑150 (MQ=11) cTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCACCGGAACACCCTTTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATc < 2:1816024/150‑1 (MQ=11) tGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCa < 2:1265411/147‑1 (MQ=39) tGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCa > 1:1265411/1‑147 (MQ=38) cAATCCTCCCCAGACGCCGGTGACAGTAACCCTGTCCACCGG‑AACACCAAGATCCTGGTTATTCGGCAAAACCCAGCGGAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGaa < 1:1686630/150‑1 (MQ=11) tCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCAGGTTCCAGACCCCGGCGAATGACGTCTACAACAAGGGTTCGTCTCTTAGTGTCACCACCGAGAACGc > 1:2262845/1‑150 (MQ=11) cccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa > 2:1220831/1‑85 (MQ=35) cccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 1:1220831/85‑1 (MQ=33) ccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcgg < 1:985009/150‑1 (MQ=255) aGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggcg < 1:833999/150‑1 (MQ=255) aGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggcg > 1:864111/1‑150 (MQ=255) ggTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTa < 2:1669714/96‑1 (MQ=11) ggTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTa > 1:1669714/1‑96 (MQ=11) ggTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa > 1:584108/1‑116 (MQ=11) tGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 2:2201838/105‑1 (MQ=33) tGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 1:2201838/1‑105 (MQ=33) gTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTc < 2:656794/114‑1 (MQ=37) gTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTc > 1:656794/1‑114 (MQ=35) cccTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGa > 2:1794642/1‑150 (MQ=39) ccTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAc > 2:1982387/1‑150 (MQ=38) cAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGaa > 2:1934597/1‑150 (MQ=38) cAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGaa > 2:1047916/1‑150 (MQ=38) cAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCATCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGaa > 1:1236824/1‑150 (MQ=255) aCGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa > 1:2247326/1‑133 (MQ=40) ccAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATc < 1:1345114/103‑1 (MQ=38) ccAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATc > 2:1345114/1‑103 (MQ=38) cAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAAt < 1:1028658/144‑1 (MQ=39) cAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAAt > 2:1028658/1‑144 (MQ=39) cAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACg > 2:927717/1‑150 (MQ=255) aaaCGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 2:1622898/1‑81 (MQ=255) aaaCGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 1:1622898/81‑1 (MQ=255) gaTTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc < 2:2283258/60‑1 (MQ=255) gaTTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc > 1:2283258/2‑61 (MQ=255) aTTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTc > 2:1635202/1‑120 (MQ=255) aTTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTc < 1:1635202/120‑1 (MQ=40) aTTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCt > 2:1144835/1‑150 (MQ=40) aTTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCt > 1:412069/1‑150 (MQ=255) aTTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCCAATCCGACGCCGGcg > 2:444211/1‑149 (MQ=255) ccGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGa < 1:1982387/150‑1 (MQ=40) gTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGAcc > 1:1501687/1‑150 (MQ=255) ttG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCa < 2:888549/150‑1 (MQ=255) ttG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAAt < 1:1103430/50‑1 (MQ=255) aaGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCAGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa > 1:2121462/1‑112 (MQ=255) aaGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCAGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa < 2:2121462/112‑1 (MQ=255) aGCCGGCAAAACCCAGGGCAGCGTCGATGTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCCCCGGCGGTAATTTCGAGCAACTGACCCCGCATCCGACGCCGGCTCAGACCACGac < 2:2262845/150‑2 (MQ=255) gCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATc > 2:755888/1‑150 (MQ=40) cGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAt > 2:2123896/1‑43 (MQ=40) aaaaCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc > 1:2097271/1‑42 (MQ=38) aaaaCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc < 2:2097271/42‑1 (MQ=38) aaaaCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTc > 2:265729/1‑72 (MQ=40) aaaaCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTc < 1:265729/72‑1 (MQ=39) cccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCaa < 2:1337262/142‑1 (MQ=40) cccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCaa > 1:1337262/1‑142 (MQ=40) cAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTc < 1:1934597/150‑1 (MQ=255) cAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTc < 1:2051855/150‑1 (MQ=255) ggCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAAc > 1:949066/1‑75 (MQ=35) ggCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAAc < 2:949066/75‑1 (MQ=35) ggCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGAt < 1:927717/150‑1 (MQ=255) ggCAGCGTCGATTTCCAGACCCCGGCGAATGACGTATACAACAACCTTGCGACTGTCAGTGTCACCATCGCACACTCTACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGAt < 1:521714/150‑1 (MQ=14) cGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGccac < 1:864504/150‑1 (MQ=255) gTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGccacc > 1:1159041/1‑150 (MQ=40) tttCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAAc > 2:1331131/1‑127 (MQ=255) tttCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCAACGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAAc < 1:1331131/127‑1 (MQ=255) | ACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACC > NC_002947/196241‑196534 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |