Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	1,748,740	T→G	5.1%	intergenic (‑31/‑301)	PP_1548 ← / → PP_5744	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	1,748,740	0	T	G	5.1%	269.4 / 4.5	96	intergenic (‑31/‑301)	PP_1548/PP_5744	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (45/46);  new base G (3/2);  total (48/48)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.29e-01

GGCAGCGGCGACGTAGAAGGCGCCGTAGACGATCGCCTGCATCAGGTCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCAATCGCCGGATTAACTCGGCGCCTGGTGGCTCATCTG  >  NC_002947/1748593‑1748887                                                                                                                                                      |                                                                                                                                                    ggCAGCGGCGACGTAGAAGGCGCCGTAGACGATCGCCTGCATCAGGTCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCt                                                                                                                                                   <  1:241755/150‑1 (MQ=255)  gCAGCGGCGACGTAGAAGGCGCCGTAGACGATCGCCTGCATCAGGTCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTg                                                                                                                                                  >  2:2099580/1‑150 (MQ=255)     gcggcgACGTAGAAGGCGCCGTAGACGATCGCCTGCATCAGGTCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGcc                                                                                                                                               <  1:561229/150‑1 (MQ=255)     gcggcgACGTAGAAGGCGCCGTAGACGATCGCCTGCATCAGGTCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGcc                                                                                                                                               <  2:2106397/150‑1 (MQ=255)       ggcgACGTAGAAGGCGCCGTAGACGATCGCCTGCATCAGGTCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCt                                                                                                                                             <  2:1051631/150‑1 (MQ=255)         cgACGTAGAAGGCGCCGTAGACGATCGCCTGCATCAGGTCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGt                                                                                                                                           <  1:1416573/150‑1 (MQ=255)           aCGTAGAAGGCGCCGTAGACGATCGCCTGCATCAGGTCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTg                                                                                                                                         >  1:1435127/1‑150 (MQ=255)            cGTAGAAGGCGCCGTAGACGATCGCCTGCATCAGGTCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTAACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGc                                                                                                                                        <  2:1911268/150‑1 (MQ=255)             gTAGAAGGCGCCGTAGACGATCGCCTGCATCAGGTCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGcc                                                                                                                                       <  2:176186/150‑1 (MQ=255)                gAAGGCGCCGTAGACGATCGCCTGCATCAGGTCGCGGTTCTGAACCACCTGCATTGAAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGGGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCacg                                                                                                                                    >  2:232937/1‑148 (MQ=255)                 aaGGCGCCGTAGACGATCGCCTGCATCAGGTCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAgg                                                                                                                                   <  2:1953128/150‑1 (MQ=255)                 aaGGCGCCGTAGACGATCGCCTGCATCAGGTCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAgg                                                                                                                                   >  2:1487938/1‑150 (MQ=255)                   ggCGCCGTAGACGATCGCCTGCATCAGGTCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGgcc                                                                                                                                 >  1:174619/1‑150 (MQ=255)                    gcgcCGTAGACGATCGCCTGCATCAGGTCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGgcca                                                                                                                                <  2:594123/150‑1 (MQ=255)                          tAGACTTTCGCTTGCAGCAGGTCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGt                                                                                                                          <  2:1170557/150‑1 (MQ=255)                          tAGACGATCGCCTGCATCAGGTCGCGGTTCTGACCCACCTTTATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAATGCCAGCCAGt                                                                                                                          <  1:2268942/150‑1 (MQ=255)                             tgagccaccaggcgccgagttaatccggcgattgagttctggtggacgttacgcaacgtagcaagcttcctcgctcgacatgtcggcccgcaggcttgctgagcaacaccGATTTC‑AATGGCTGGCCCTGTTGCCAAGGCCAGCCAGTGa                                                                                                                        >  1:53149‑M1/111‑150 (MQ=255)                              cGATCGCCTGCATCAGGTCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGaaa                                                                                                                      <  2:2333450/150‑1 (MQ=255)                               gATCGCCTGCATCAGGTCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAAt                                                                                                                     <  2:346042/150‑1 (MQ=255)                                   gCCTGCATCAGGTCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGgt                                                                                                                 <  1:1016096/150‑1 (MQ=255)                                   gCCTGCATCAGGTCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGgt                                                                                                                 <  2:1435127/150‑1 (MQ=255)                                    ccTGCATCAGGTCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGgtg                                                                                                                <  1:1600982/150‑1 (MQ=255)                                    ccTGCATCAGGTCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGACCTGTTGCCAAGGCCAGCCAGTGAAATCGgtg                                                                                                                >  1:584916/1‑150 (MQ=255)                                     cTGCATCAGGTCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGgtgt                                                                                                               >  1:1025658/1‑150 (MQ=255)                                          tCAGGTCGCGGTTCTGAACCACCTGCANTGCAGCGCNGGCNTCNCGANCTTTCTTGCCGAACAGTTTTCCAAGCATTGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTc                                                                                                          >  1:2172081/1‑150 (MQ=255)                                            cgagttaatccggcgattgagttctggtggacgttacgcaacgtagcaagcttcctcgctcgacatgtcggcccgcaggcttgcttagcaacaccGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCg                                                                                                                   <  2:1159494‑M1/44‑1 (MQ=255)                                            cgagttaatccggcgattgagttctggtggacgttacgcaacgtagcaagcttcctcgctcgacatgtcggcccgcaggcttgctgagcaacaccGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCg                                                                                                                   >  1:1159494‑M1/96‑139 (MQ=255)                                               tCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCaa                                                                                                     >  1:1784030/1‑150 (MQ=255)                                               tCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCaa                                                                                                     <  1:669300/150‑1 (MQ=255)                                                  cgGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGcc                                                                                                  >  1:1271754/1‑150 (MQ=255)                                                      tCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCg                                                                                              <  1:2152486/150‑1 (MQ=255)                                                       cTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAAGAGTATTCCAAGCATTTGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCgg                                                                                             >  1:1799535/1‑150 (MQ=255)                                                            ccaccTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTg                                                                                                             <  2:362776/129‑1 (MQ=255)                                                            ccaccTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTg                                                                                                             >  1:362776/1‑129 (MQ=255)                                                            ccaccTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGACCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGa                                                                                        <  2:584916/150‑1 (MQ=255)                                                              accTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACa                                                                                      >  1:2218925/1‑150 (MQ=255)                                                               ccTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACAt                                                                                     >  2:355104/1‑150 (MQ=255)                                                                cTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATg                                                                                    >  2:1892552/1‑150 (MQ=255)                                                                 tGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑GC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGt                                                                                   >  1:2263021/1‑150 (MQ=255)                                                                  gCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTc                                                                                  <  1:1892552/150‑1 (MQ=255)                                                                    aTTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTcga                                                                                <  2:1271754/150‑1 (MQ=255)                                                                     ttGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTcgag                                                                               <  2:601649/150‑1 (MQ=255)                                                                        ggacgttacgcaacgtagcaagcttcctcgctcgacatgtcggcccgcaggcttgctgagcaacaccGATTTC‑ACTGGCTGGCCCTGTTGCCAAGgccagc                                                                                                                              >  1:970608‑M1/68‑101 (MQ=255)                                                                        ggacgttacgcaacgtagcaagcttcctcgctcgacatgtcggcccgcaggcttgctgagcaacaccGATTTC‑ACTGGCTGGCCCTGTTGCCAAGgccagc                                                                                                                              <  2:970608‑M1/34‑1 (MQ=255)                                                                        cAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTcgagcga                                                                            <  2:368661/150‑1 (MQ=255)                                                                        cAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTcgagcga                                                                            >  1:1502589/1‑150 (MQ=255)                                                                         gacgttacgcaacgtagcaagcttcctcgctcgacatgtcggcccgcaggcttgctgagcaacaccGATTTCACT‑GGCTGGCCCTGTTGCCAAGgcca                                                                                                                                <  1:837571‑M1/32‑1 (MQ=255)                                                                         gacgttacgcaacgtagcaagcttcctcgctcgacatgtcggcccgcaggcttgctgagcaacaccGATTTC‑ACTGGCTGGCCCTGTTGCCAAGgcca                                                                                                                                >  2:837571‑M1/67‑98 (MQ=255)                                                                                gCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCtt                                                                    >  1:151848/1‑150 (MQ=255)                                                                                  ttCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGaa                                                                        <  2:1614293/144‑1 (MQ=255)                                                                                  ttCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGaa                                                                        >  1:1614293/1‑144 (MQ=255)                                                                                  ttCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGc                                                                  >  1:4637/1‑150 (MQ=255)                                                                                  ttCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAACAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGc                                                                  >  1:251349/1‑150 (MQ=255)                                                                                    cACGACCTTTCTTGCCGAACAGTTTTCCANGCATTGNGTGNTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACNTGTCGAGCGAGGAAGCTTGCTa                                                                <  2:2172081/150‑1 (MQ=255)                                                                                     aCGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTAc                                                               >  2:1142054/1‑150 (MQ=255)                                                                                      cGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACg                                                              >  2:1011244/1‑150 (MQ=255)                                                                                      cGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACg                                                              <  2:1502589/150‑1 (MQ=255)                                                                                       gACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGt                                                             >  1:1417907/1‑150 (MQ=255)                                                                                       gACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGt                                                             >  2:1604209/1‑150 (MQ=255)                                                                                        aCCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGtt                                                            <  1:355104/150‑1 (MQ=255)                                                                                        aCCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGtt                                                            <  2:1799535/150‑1 (MQ=255)                                                                                           tttCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTcga                                                                                <  1:233108/127‑1 (MQ=255)                                                                                           tttCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTcga                                                                                >  2:233108/1‑127 (MQ=255)                                                                                                 gCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGc                                                                                               >  1:2047664/1‑106 (MQ=255)                                                                                                 gCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGc                                                                                               <  2:2047664/106‑1 (MQ=255)                                                                                                  ccGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTc                                                  >  1:1474643/1‑150 (MQ=255)                                                                                                     aaCAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTccac                                               <  2:1025658/150‑1 (MQ=255)                                                                                                        ccgagtCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGTGCGAGGAAACTTGCTACGTTGCGTAACGTCCACCAg                                            >  1:1248546/6‑150 (MQ=255)                                                                                                        aGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTccaccaa                                            >  1:687466/1‑149 (MQ=255)                                                                                                          ttttCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGaa                                          <  2:2263021/150‑1 (MQ=255)                                                                                                               cAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCaa                                     <  1:852883/150‑1 (MQ=255)                                                                                                               cAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCaa                                     >  1:1617400/1‑150 (MQ=255)                                                                                                                 aGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGc                                                                      >  2:739722/1‑115 (MQ=255)                                                                                                                 aGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGc                                                                      <  1:739722/115‑1 (MQ=255)                                                                                                                  gCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGAGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCAATCg                                  >  1:2137750/1‑150 (MQ=255)                                                                                                                     tGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCtt                                                                    >  1:2082583/1‑113 (MQ=255)                                                                                                                     tGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCtt                                                                    <  2:2082583/113‑1 (MQ=255)                                                                                                                     tGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCAATCGCCg                               >  2:1902527/1‑150 (MQ=255)                                                                                                                     tGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCAATCGCCg                               <  1:2099580/150‑1 (MQ=255)                                                                                                                      ccgatcttGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCAATCGCCgg                              <  1:432803/144‑1 (MQ=255)                                                                                                                         gtgtTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCAATCGCCGGAtt                           <  1:2019576/150‑1 (MQ=255)                                                                                                                           gtTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCAATCGCCGGATTaa                         >  1:2065552/1‑150 (MQ=255)                                                                                                                            ttGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCAATCGCCGGATTAAc                        >  1:952674/1‑150 (MQ=255)                                                                                                                              gCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCAATCGCCgg                              >  2:2214610/1‑142 (MQ=255)                                                                                                                              gCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCAATCGCCgg                              <  1:2214610/142‑1 (MQ=255)                                                                                                                                 ccGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCAATCGCCGGATTAACTCGgc                   <  2:2218925/150‑1 (MQ=255)                                                                                                                                    tGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTg                                                                                                             <  1:342794/57‑1 (MQ=255)                                                                                                                                    tGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTg                                                                                                             >  2:342794/1‑57 (MQ=255)                                                                                                                                        gTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTccac                                               >  2:533903/1‑115 (MQ=255)                                                                                                                                        gTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTccac                                               <  1:533903/115‑1 (MQ=255)                                                                                                                                         ttGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCAATCGCCGGATTAACTCGGCGCCtggtg           <  1:1487938/150‑1 (MQ=255)                                                                                                                                             TTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCAATCGCCGGATTAACTCGGCGCCTGGTGGCTc       >  2:952674‑M1/1‑150 (MQ=255)                                                                                                                                              TTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTc                                                  >  1:2212946‑M1/1‑106 (MQ=255)                                                                                                                                              TTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTc                                                  <  2:2212946‑M1/106‑1 (MQ=255)                                                                                                                                                  cc‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCAATCGCCGGATTAACTGGGCGCCTGGTGGCTCATct   >  2:1539518/1‑150 (MQ=255)                                                                                                                                                   c‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCAATCGCCGGATTAACTCGGCGCCTGGTGGCTCATctg  >  1:183059/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                    GGCAGCGGCGACGTAGAAGGCGCCGTAGACGATCGCCTGCATCAGGTCGCGGTTCTGAACCACCTGCATTGCAGCGCGGGCTTCACGACCTTTCTTGCCGAACAGTTTTCCAAGCATGGGGTGTTGCTCCGTGGGGTTGATTTC‑CC‑GTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCAATCGCCGGATTAACTCGGCGCCTGGTGGCTCATCTG  >  NC_002947/1748593‑1748887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑