| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,899,025 | T→C | 6.0% | intergenic (+53/‑467) | PP_t18 → / → PP_1703 | tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,899,025 | 0 | T | C | 6.0% | 291.0 / 4.7 | 99 | intergenic (+53/‑467) | PP_t18/PP_1703 | tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase |
| Reads supporting (aligned to +/- strand): ref base T (43/50); new base C (3/3); total (46/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.40e-01 | |||||||||||
Only 100 of 104 total aligned reads displayed.
CCACCACTCGATGTATAGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAGTGCTCA > NC_002947/1898877‑1899173 | ccaccaCTCGATGTATAGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCtt > 2:1089361/1‑150 (MQ=32) cTCGATGTATAGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTc < 1:779699/150‑1 (MQ=35) tCGATGTATAGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTc < 1:2056148/149‑1 (MQ=35) tCGATGTATAGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTc > 2:2056148/1‑149 (MQ=35) tCGATGTATAGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCg > 1:131167/1‑150 (MQ=35) gATGTATAGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCt < 1:1089361/150‑1 (MQ=35) tataGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCttttt < 2:2118699/150‑1 (MQ=35) tataGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAAAAAGCGACCCTAAGGTCGCtttct < 1:1237742/150‑3 (MQ=255) ataGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACATTAGGGTCGCtttttt < 2:1252951/150‑1 (MQ=25) gTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCCCCACTTGGGTCGCTTTTTTTATTTCTGcat > 1:252/1‑150 (MQ=14) tAGTTCAGTCGGTTAGACAGACGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGcatc < 1:120965/150‑1 (MQ=255) aGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGcatca < 2:2138139/150‑1 (MQ=255) ttCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGTGTCGCtttt > 2:1489485/1‑133 (MQ=18) ttCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGTGTCGCtttt < 1:1489485/133‑1 (MQ=18) ttCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATg < 2:131167/150‑1 (MQ=255) ttCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATg < 2:1017456/150‑1 (MQ=255) cAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCa > 1:629262/1‑150 (MQ=255) tCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATc < 1:369028/150‑1 (MQ=255) ggTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGt < 2:2234813/150‑1 (MQ=255) gTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGtt > 2:549628/1‑150 (MQ=255) gTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCACGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCCTAAGGTc < 1:2223832/119‑1 (MQ=255) gTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCACGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCCTAAGGTc > 2:2223832/1‑119 (MQ=255) aaTACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCAAGGGACCACTGAACACCCGGAAGTAAAAAAGTAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGc < 1:2034169/150‑1 (MQ=255) tACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTa > 1:1674215/1‑107 (MQ=33) tACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTa < 2:1674215/107‑1 (MQ=33) tACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGccc > 1:1153059/1‑150 (MQ=255) aCCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCt < 2:1590479/150‑1 (MQ=255) cGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGc > 2:922909/1‑150 (MQ=255) gCCTGTCAGGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTACAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGcaa > 2:515967/1‑150 (MQ=255) gCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGcaa > 1:1720981/1‑150 (MQ=255) gCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGcaa > 2:189125/1‑150 (MQ=255) ccTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGcaac > 1:1932053/1‑150 (MQ=255) tGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGcaacaa > 1:2193980/1‑150 (MQ=255) gTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAg > 1:393025/1‑150 (MQ=255) tCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAgg < 2:90954/150‑1 (MQ=255) tCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATAATGCAATCGTTTACGCCCTGCAACAAgg < 2:1818606/150‑1 (MQ=255) cACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAggg < 1:189125/150‑1 (MQ=255) cACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAggg < 1:1860792/150‑1 (MQ=255) gCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTAttt < 1:205266/111‑1 (MQ=255) gCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTAttt > 2:205266/1‑111 (MQ=255) tCGCGGGTTCGAGTCCCCTCCGCTGCGCCATATTCCACCTCCAGGTCCCACTGAACACCCGCAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCTTCATGCAATCGTTTCCGCCCTGCAACAATGGGCTAGCTgcgc < 1:849039/150‑1 (MQ=21) cgcgGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGcc < 1:2225854/150‑1 (MQ=255) gcgGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCtt < 1:1716917/82‑1 (MQ=35) gcgGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCtt > 2:1716917/1‑82 (MQ=35) cgGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACCTACCGGCCTCGCAGCGTTCTCGGAATTAAAAAAGAACGAGATCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCAc < 1:523413/150‑1 (MQ=25) gggTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCCTAAGGTCGctttcttttt > 2:1111088/1‑95 (MQ=14) gggTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCCTAAGGTCGctttcttttt < 1:1111088/97‑3 (MQ=14) tCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACtcttc < 2:324832/150‑1 (MQ=255) aGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCttcttc < 2:393025/150‑1 (MQ=255) tCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGACGTAAAAAAGAACGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTccc < 1:2173222/150‑1 (MQ=255) ccGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGGAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAg > 1:1696801/1‑122 (MQ=255) ccGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGGAGTAAAAAAGAAAGCGACCTTAGGGTCGCTCTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAg < 2:1696801/122‑1 (MQ=255) ccGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTccc < 2:750750/148‑1 (MQ=255) ccGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTccc > 1:750750/1‑148 (MQ=255) cGTCGGCTGCGCAATATTCCAATTCAAGGGCCGACTGAACAGCCGGAAGTAAAAAAGAAAACGACCTTGGGGTCGCTTATTTTATTGCTGCATCATGCAATCGTTTACACACTGCAGCAAGGGGCTAGCTGCGTCACTCTTCTTcccctg > 2:745674/1‑147 (MQ=255) gCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTc < 1:1633570/150‑1 (MQ=255) gCTGCGCCATATTCCACTTCCACGGCCCACTGACCACCCGCAAGTAAAAAAGAATGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTc < 2:1360439/150‑1 (MQ=255) gcCCTATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCGGCAACAAGGGGCTAGCTGCGCCACTCCTCTTCCCGCAGCGTCAGccc < 2:629262/150‑3 (MQ=255) ccATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCAcc > 1:576103/1‑150 (MQ=255) cATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACATCAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGAGACGCTCTTCTTCCCGCCGCGTCTGCActt > 1:1071701/1‑148 (MQ=25) tCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAACTCGGGGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAAc < 1:613172/150‑1 (MQ=38) tCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAAc > 1:40318/1‑150 (MQ=255) ccACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAggg < 2:2083268/105‑1 (MQ=255) ccACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAggg > 1:2083268/1‑105 (MQ=255) cACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATc < 2:1781967/83‑1 (MQ=255) cACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATc > 1:1781967/1‑83 (MQ=255) aCTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCt < 1:688596/93‑1 (MQ=255) aCTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCg > 2:2183100/1‑150 (MQ=255) aCTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCg > 1:1090344/1‑150 (MQ=255) aCTTCCAGGGACCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCt > 2:688596/1‑93 (MQ=255) ttCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCGCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTc > 1:1251644/1‑150 (MQ=255) ttCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTc > 1:1019660/1‑150 (MQ=255) cAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCCACGGGGGTCGACGTGTACTACTCTTCTTCCTGCATCGTCAGCACCTCAAACCCGTCCTc > 2:1814673/1‑150 (MQ=25) ggCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGAt < 2:2193980/150‑1 (MQ=255) cACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCAcc < 1:922909/150‑1 (MQ=255) aCTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTGATTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCg > 1:1009096/1‑150 (MQ=255) cTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCaaa > 1:709693/1‑132 (MQ=255) cTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCaaa < 2:709693/132‑1 (MQ=255) cTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCgg < 1:549628/150‑1 (MQ=255) cTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCgg < 2:821454/150‑1 (MQ=255) gAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGccc > 1:1396669/1‑76 (MQ=255) gAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGccc < 2:1396669/76‑1 (MQ=255) aaCACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACtctt > 1:1050768/1‑104 (MQ=255) aaCACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACtctt < 2:1050768/104‑1 (MQ=255) ccGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGGTTACGCCCTGCAACAAGGGGCTAGCTGCGCAACTCTTCTTCCCGCAGCGTCAGAAACTCAAACCCGTCCTAGCTCACCGGCATCTCCt > 1:247230/1‑150 (MQ=255) cGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTg < 2:1932053/150‑1 (MQ=255) ggAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAgggg > 1:1739542/1‑80 (MQ=255) ggAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAgggg < 2:1739542/80‑1 (MQ=255) ggAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCGAGTCTTCTTCCCGCAGCGTCAGCACCTCAAACCGGTACTCGATCACGGGCATCTCATgg > 1:947097/1‑150 (MQ=255) ggAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTgg < 1:2183100/150‑1 (MQ=255) aaaaaGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTTCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATgg > 2:2093014/1‑150 (MQ=255) gaaagCGACCTTAGGGTCGCTTTTTTTTTTTTTTCTTCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAggg > 2:1413450/1‑150 (MQ=255) gaaagCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAggg < 2:576103/150‑1 (MQ=255) agCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAg > 2:1990371/1‑150 (MQ=255) agCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAg > 1:505040/1‑150 (MQ=255) aCCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAg > 2:1507050/1‑88 (MQ=255) aCCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAg < 1:1507050/88‑1 (MQ=255) cTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAGTGCTCa < 2:1090344/150‑1 (MQ=255) ttAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCttcttc < 2:492735/79‑1 (MQ=255) ttAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCttcttc > 1:492735/1‑79 (MQ=255) | CCACCACTCGATGTATAGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATATTCCACTTCCAGGGCCCACTGAACACCCGGAAGTAAAAAAGAAAGCGACCTTAGGGTCGCTTTTTTTATTTCTGCATCATGCAATCGTTTACGCCCTGCAACAAGGGGCTAGCTGCGCCACTCTTCTTCCCGCAGCGTCAGCACCTCAAACCCGTCCTCGATCACCGGCATCTCCTGGGACATGGGAGGGCAGTGCTCA > NC_002947/1898877‑1899173 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |