| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 198,777 | T→A | 6.3% | L1428Q (CTG→CAG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 198,777 | 0 | T | A | 6.3% | 261.5 / 5.5 | 90 | L1428Q (CTG→CAG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (38/46); new base A (3/3); total (41/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGTCAGCACCGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTG > NC_002947/198628‑198923 | ggTCAGCACCGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCt < 2:706795/150‑1 (MQ=255) tCAGCACCGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTgg < 1:857991/150‑1 (MQ=255) aGCACCGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGTCTTCACTTCGGTAGCCGTTATCGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTc < 1:870930/150‑1 (MQ=18) aGCACCGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTc < 2:318941/150‑1 (MQ=255) aGCACCGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTc < 1:1726508/150‑1 (MQ=255) aGCACCGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTc < 1:960447/150‑1 (MQ=255) gCACCGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCg < 2:2254570/150‑1 (MQ=255) cACCGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGt < 2:1089996/150‑1 (MQ=255) cACCGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGt < 2:1800021/150‑1 (MQ=255) ccGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGa > 1:48178/1‑150 (MQ=255) ccGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATACCGGAAGAAACGCTATCTGTAGCCGACAACTTCAGACTGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGa < 1:1451952/150‑1 (MQ=18) cGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGAc < 2:48178/150‑1 (MQ=255) cGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCAGGTCGtcag < 1:2335054/150‑4 (MQ=255) cGAGGTCACCGACGAGCCAGGTACGCCAAGCAACGAAGGCGATATCGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTCGCCGAGAACGGCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCATGACCTAGTCATGAc > 1:703300/1‑150 (MQ=17) gAGGTCACCTACGAGCCAGGTACGCCAGGCAACGAGGGCGATAGGGTCAAGGTCACGATCACGCCGCAGCCGACTTCGGGATCCGAGAACGTCAACACGACCTTCACTGTGCACATCACCACCGCCGTGCCTCACGACTTGGTCgccacc > 2:295842/1‑145 (MQ=255) aGGTCACCGACGAGCCAGGTACGCCAGGAAACGAAGACGAACTCGTCTAGCACACCAGCACGGCCGACCCGACTTGGGGAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGAccc > 2:1433957/1‑150 (MQ=17) gTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTg > 2:411558/1‑150 (MQ=255) tCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGa < 1:800539/150‑1 (MQ=255) gaGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGa < 2:1245271/142‑1 (MQ=255) gaGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGa > 1:1245271/1‑142 (MQ=255) gaGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACACCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCaacaac < 1:1949515/150‑1 (MQ=255) ggTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAg < 1:790181/150‑1 (MQ=255) ggTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAg < 1:685089/150‑1 (MQ=255) ggTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAg < 2:2227897/150‑1 (MQ=255) ccAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCAcc < 2:1648325/150‑1 (MQ=255) cAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCa < 1:777354/150‑1 (MQ=255) ggCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATc > 2:78878/1‑150 (MQ=255) aaCGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAg < 1:2076017/150‑1 (MQ=255) aaCGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAg > 1:1879312/1‑150 (MQ=255) aaGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCg > 2:1211355/1‑150 (MQ=255) gATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGTCCTGGCTCACGACCTGGTCGTGACCCTGAGCaacaac < 1:1895043/123‑1 (MQ=255) gATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCaacaac > 2:1895043/1‑123 (MQ=255) atatCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACg < 2:1733634/123‑1 (MQ=255) atatCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACg > 1:1733634/1‑123 (MQ=255) tCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACAGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCa < 1:1495989/150‑1 (MQ=255) gTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGGTCACGACCAGGTCGTGAgcca < 2:1105892/107‑2 (MQ=17) gTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGGTCACGACCAGGTCGTGAgcca > 1:1105892/1‑106 (MQ=17) gTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCAc > 2:1970123/1‑128 (MQ=255) gTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCAc < 1:1970123/128‑1 (MQ=255) gTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAgc < 2:411309/150‑1 (MQ=255) gTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAgc < 1:411558/150‑1 (MQ=255) tCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGt > 2:2097492/1‑150 (MQ=255) ccATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTaca > 1:1986884/1‑150 (MQ=255) ccATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTaca > 1:242686/1‑150 (MQ=255) cACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCa < 2:929435/150‑1 (MQ=255) ggCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCacga < 1:314117/150‑1 (MQ=255) gCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCacgac < 1:2097492/150‑1 (MQ=255) ccAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCa < 2:1879312/150‑1 (MQ=255) cAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACAGCCCTGGCTAACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAg > 2:451930/1‑150 (MQ=255) gACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAggg > 2:846654/1‑150 (MQ=255) gACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAggg > 1:1071871/1‑150 (MQ=255) ttCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAg < 2:961683/106‑1 (MQ=255) ttCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAg > 1:961683/1‑106 (MQ=255) gagaACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCt < 2:296537/56‑1 (MQ=255) gagaACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCt > 1:296537/1‑56 (MQ=255) agaACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATc > 1:1706389/1‑150 (MQ=255) gTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAg > 2:388065/1‑104 (MQ=255) gTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAg < 1:388065/104‑1 (MQ=255) tCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGcaac < 2:884545/68‑1 (MQ=255) tCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGcaac > 1:884545/1‑68 (MQ=255) tCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATg > 1:168473/1‑150 (MQ=255) cAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTc > 1:1907300/1‑139 (MQ=255) cAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTc < 2:1907300/139‑1 (MQ=255) aaCCGACCTTCCCTCCGCACATCAACACCCCCCTTGCTCACGACCTGGTCTTGCCACTGAGCAACAACGCTCAGGTCACCAGCAAGGACGGCGAAACCAGCACACCGTACACTCACGACGCGCAGGGCGCTGACGTCTATCAGGATGCgg < 2:242686/150‑1 (MQ=17) aaCCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCgg > 1:767788/1‑150 (MQ=255) aCCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCggg > 2:1005048/1‑150 (MQ=255) ccGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGc < 1:451930/150‑1 (MQ=255) ccGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGc < 1:132269/150‑1 (MQ=255) gACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCAGGTc > 1:1490865/1‑46 (MQ=255) gACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCAGGTc < 2:1490865/46‑1 (MQ=255) cTTCACTGTGCACATCAACACCGCCCTGGCTCACGACGTGGTCGTGACCCTGAGAAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGAt > 1:179342/1‑150 (MQ=255) cTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGAt > 2:623251/1‑150 (MQ=255) cACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGAcgc < 1:961721/111‑1 (MQ=255) cACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGAcgc > 2:961721/1‑111 (MQ=255) tgtgCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACCACGCGCAGGGCCATGACGTCGATCAGTATTCGGGCCAGATCAGCCt > 2:1191388/1‑150 (MQ=18) gtgCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGTTCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTg < 1:1191388/150‑1 (MQ=255) gtgCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTg < 1:623251/150‑1 (MQ=255) aTCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCgg < 1:2059522/130‑1 (MQ=255) aTCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCgg > 2:2059522/1‑130 (MQ=255) aaCACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAAc > 2:886168/1‑150 (MQ=255) cacCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCAcc < 1:720935/55‑1 (MQ=255) cacCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCAcc > 2:720935/1‑55 (MQ=255) cacCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAggg > 1:2273488/1‑102 (MQ=255) cacCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAggg < 2:2273488/102‑1 (MQ=255) cGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCg > 2:480912/1‑121 (MQ=255) cGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCg < 1:480912/121‑1 (MQ=255) cGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACTcggc > 2:1639672/1‑150 (MQ=255) tcagggtCACGACCAGGTCGTGAGCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACTCGGCGGt > 2:1616267/7‑150 (MQ=255) cTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACCCTCAGGTGACCATCAAGCGCGGCGAAACCAGCGCACCGTACACCCACGACGCGCAGGGCGATGACTTCTATCAGGATGCGTGCCAGATCAGCCTGGGCATCAACTCGGCGGTg < 2:846668/150‑1 (MQ=14) gACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAgc > 1:2254708/1‑60 (MQ=38) gACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAgc < 2:2254708/60‑1 (MQ=38) aCCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTg < 2:1986884/150‑1 (MQ=255) aCCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTg > 1:458969/1‑150 (MQ=255) | GGTCAGCACCGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTG > NC_002947/198628‑198923 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |