Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,755,062 C→T 6.7% R449C (CGC→TGC)  czcA‑II → cation efflux system protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,755,0620CT 6.7% 256.2 / 6.1 90R449C (CGC→TGC) czcA‑IIcation efflux system protein
Reads supporting (aligned to +/- strand):  ref base C (42/41);  new base T (3/3);  total (46/44)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.01e-01

GCTGGACTTCGGCATCATCGTCGACGGCGCGGTGGTGATCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGTGGTCATGGCCCTGTTGGGCGCGATGATCCTTTCGGTCACGTTC  >  NC_002947/2754917‑2755211
                                                                                                                                                 |                                                                                                                                                     
gcTGGACTTCGGCATCATCGTCGACGGCGCGGTGGTGATCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGAAGCGGCGTTAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGAACgccg                                                                                                                                                   <  1:1591744/150‑1 (MQ=39)
  tGGACTTCGGCATCATCGTCGACGGCGCGGTGGTGATCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCATgccggc                                                                                                                                                 >  2:798876/1‑150 (MQ=255)
  tGGACTTCGGCATCATCGTCGACGGCGCGGTGGTGATCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACgccggc                                                                                                                                                 >  1:1181844/1‑150 (MQ=255)
      cTTCGGCATCATCGTCGACGGCGCGGTGGTGATCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCt                                                                                                                                             >  1:3338/1‑150 (MQ=255)
      cTTCGGCATCATCGTCGACGGCGCGGTGGTGATCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCt                                                                                                                                             >  2:505921/1‑150 (MQ=255)
          ggCATCATCGTCGACGGCGCGGTGGTGATCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATc                                                                                                                                         >  1:2292648/1‑150 (MQ=255)
             atcatcGTCGACGGCGCGGTGGTGATCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGCTCTAt                                                                                                                                      >  1:1981299/1‑150 (MQ=255)
             atcatcGTCGACGGCGCGGTGGTGATCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTAt                                                                                                                                      <  2:1181844/150‑1 (MQ=255)
             atcatcGTCGACGGCGCGGTGGTGATCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTAt                                                                                                                                      <  1:132293/150‑1 (MQ=255)
              tcatcGTCGACGGCGCGGTGGTGATCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATg                                                                                                                                     <  1:2017442/150‑1 (MQ=255)
               ctacctcgACTGAGCGGTGGTGATCGTGGAAAAGGGCATCCGTGGCCTGGCCCATGCCGAGCAGCGCCACGGTCGCATGATAACCGGCAGCGAACGGTTCCATGAGGTGTTTTGCGCTGCCAGCGAAGCACGCCGGCCGATAATCTATgg                                                                                                                                    >  2:470044/6‑150 (MQ=255)
               catcGTCGACGGCGCGGTGGTGATCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATgg                                                                                                                                    >  1:1067479/1‑150 (MQ=255)
                atcGTCGACGGCGCGGTCGTGCTCGTGGAAAGCGGATCCCGCCGCCTGGCCGGTGTCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCCGCCCGCGAAGCACGCCGGCCGCTGATCTATggg                                                                                                                                   <  2:734023/150‑1 (MQ=255)
                 acttcgACGGCGCGGTGGTGATCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAAAGGTTCCATGAGGAATATGCCGATGCCCGCGAAGCACGCCGGCCGCTGATCGATggtc                                                                                                                                  >  1:1835492/4‑148 (MQ=255)
                   gtcgACGGCGCGGTGGTGATCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAg                                                                                                                                >  1:993274/1‑150 (MQ=255)
                    tcgACGGCGCGGTGGTGATCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGt                                                                                                                               >  1:1137610/1‑150 (MQ=255)
                    tcgACGGCGCGGTGGTGATCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGt                                                                                                                               <  2:1981299/150‑1 (MQ=255)
                    tcgACGGCGCGGTGGTGATCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGt                                                                                                                               >  1:585657/1‑150 (MQ=255)
                       aCGGCGCGGTGGTGATCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGATCACATGCTGACACGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGACGCTGCTCTATGGGCAGTTGa                                                                                                                            >  2:311460/1‑150 (MQ=255)
                             cgGTGGTGATCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGAtcatca                                                                                                                      >  1:197158/1‑150 (MQ=255)
                               gtggtgATCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCTCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCAtg                                                                                                                    >  1:443391/1‑150 (MQ=255)
                                  gtgATCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCAtggtg                                                                                                                 <  1:125488/150‑1 (MQ=255)
                                     aTCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATg                                                                                                                                     >  2:69983/1‑127 (MQ=255)
                                     aTCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATg                                                                                                                                     <  1:69983/127‑1 (MQ=255)
                                      tCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGAGAACCACGACGCCGGTAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCAtggtgggca                                                                                                             >  2:1248104/1‑147 (MQ=255)
                                         tGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGCGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTAcc                                                                                                          >  1:1112334/1‑150 (MQ=255)
                                               aCGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGa                                                                                                    <  2:1112334/150‑1 (MQ=255)
                                                   cATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTAt                                                                                                                                      >  1:1585544/1‑112 (MQ=255)
                                                   cATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTAt                                                                                                                                      <  2:1585544/112‑1 (MQ=255)
                                                   cATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCtt                                                                                                >  1:1943089/1‑150 (MQ=255)
                                                    aTCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCttt                                                                                               <  1:1658948/150‑1 (MQ=255)
                                                    aTCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCttt                                                                                               >  2:1505206/1‑150 (MQ=255)
                                                       cGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGcc                                                                                            <  2:1137610/150‑1 (MQ=255)
                                                         tCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGcctt                                                                                          <  2:3338/150‑3 (MQ=255)
                                                            ccTGGCCCACGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGAc                                                                                       >  2:746308/1‑150 (MQ=255)
                                                                gCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCATGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCggg                                                                                   <  1:798876/150‑1 (MQ=255)
                                                                gCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCggg                                                                                   <  2:925888/150‑1 (MQ=255)
                                                                 cccACGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCgggg                                                                                  <  1:746308/150‑1 (MQ=255)
                                                                  ccATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGt                                                                                 >  2:1889218/1‑150 (MQ=255)
                                                                      gCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAg                                                                             <  2:1067479/150‑1 (MQ=255)
                                                                       cccAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAgg                                                                            <  2:197158/150‑1 (MQ=255)
                                                                        ccAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACaccgg                                                                                                                                                  <  2:1451023/79‑1 (MQ=255)
                                                                        ccAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGAACaccgg                                                                                                                                                  >  1:1451023/1‑79 (MQ=255)
                                                                                gcCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGTCGCTGATCTATGGGCAGTTGATCATCAtggtgg                                                                                                                <  1:1525582/105‑1 (MQ=255)
                                                                                gcCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCAtggtgg                                                                                                                >  2:1525582/1‑105 (MQ=255)
                                                                                gcCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCAtggtgg                                                                                                                >  2:1525630/1‑105 (MQ=255)
                                                                                gcCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCAtggtgg                                                                                                                <  1:1525630/105‑1 (MQ=255)
                                                                                  cACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTAt                                                                                                                                      >  2:1365818/1‑81 (MQ=255)
                                                                                  cACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTAt                                                                                                                                      <  1:1365818/81‑1 (MQ=255)
                                                                                  cACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGGGGGCAAGATGTTc                                                                 >  1:110981/1‑150 (MQ=255)
                                                                                  cACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTc                                                                 >  2:1366572/1‑150 (MQ=255)
                                                                                     ggTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCAc                                                              <  2:1179991/150‑1 (MQ=255)
                                                                                       tCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCATGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCt                                                                                          <  1:1473191/120‑1 (MQ=255)
                                                                                       tCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCATGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCt                                                                                          >  2:1473191/1‑120 (MQ=255)
                                                                                         gtaTGCTGATCGGCGGCGAATGGGTCCATGAGGTGTTTCCCGCTGCGCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTa                                                          <  2:443391/148‑1 (MQ=21)
                                                                                         gCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCAtggt                                                                                                                  <  1:1362949/94‑1 (MQ=255)
                                                                                         gCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCAtggt                                                                                                                  >  2:1362949/1‑94 (MQ=255)
                                                                                           aTGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATg                                                        >  2:103513/1‑150 (MQ=255)
                                                                                               tGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCt                                                                                                         <  1:2206489/97‑1 (MQ=255)
                                                                                               tGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCt                                                                                                         >  2:2206489/1‑97 (MQ=255)
                                                                                               tGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCt                                                    <  1:376529/150‑1 (MQ=255)
                                                                                                   ccGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTAc                                                >  1:1629800/1‑150 (MQ=255)
                                                                                                       ggcgAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGTg                                            <  2:993274/150‑1 (MQ=255)
                                                                                                       ggcgAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGTg                                            <  1:287193/150‑1 (MQ=255)
                                                                                                          gAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAgg                                                                            >  1:1962792/1‑115 (MQ=255)
                                                                                                          gAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAgg                                                                            <  2:1962792/115‑1 (MQ=255)
                                                                                                           aaCGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCGCGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACAGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGTGGTCa                                        >  1:1887944/1‑150 (MQ=255)
                                                                                                                 tCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGTGGTCATGGccc                                  >  2:1164276/1‑150 (MQ=255)
                                                                                                                   cgatctgtgtTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCCCCCTATGGCCTTTACCGTGGTCATGGCCCTg                                <  1:661767/144‑1 (MQ=255)
                                                                                                                   cATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGTGGTCATGGCCCTg                                >  2:1831069/1‑150 (MQ=255)
                                                                                                                    aTGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTAc                                                                                                           >  2:1087055/1‑74 (MQ=255)
                                                                                                                    aTGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTAc                                                                                                           <  1:1087055/74‑1 (MQ=255)
                                                                                                                    aTGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGTGGTCATGGCCCTGt                               <  1:2149914/150‑1 (MQ=255)
                                                                                                                    aTGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGTGGTCATGGCCCTGt                               <  1:1505206/150‑1 (MQ=255)
                                                                                                                    aTGAGGTGTTTGCCGCTGCACGCGACGAAGTGCGGCCGCTGATCTATGGGCAGGTGATCATCATGGGGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGCCCTTTACCGTGGTCATGGCCCTGt                               >  2:1309790/1‑150 (MQ=255)
                                                                                                                     tGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGTGGTCATGGCCCTGtt                              <  2:1025834/150‑1 (MQ=255)
                                                                                                                      gAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGTGGTCATGGCCCTGTTg                             <  2:1943089/150‑1 (MQ=255)
                                                                                                                       gggTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGTGGTCATGGCCCTGTTgg                            <  2:2082736/149‑1 (MQ=255)
                                                                                                                        ggTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGTGGTCATGGCCCTGTTggg                           >  2:188476/1‑150 (MQ=255)
                                                                                                                          tgtTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGGGGTGTACCTGACGTTCTTTGCCTTGACGGCGGTCGAGGACAAGATGTTCCACACTATGGCATTTACCGTGGTCATGGCCgtgtagaccg                         >  2:661767/1‑144 (MQ=255)
                                                                                                                            tttGCCACTGCCGGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTCATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGTGGTCATGGCCCTGTTGGGcgcg                       >  2:1311771/1‑150 (MQ=255)
                                                                                                                                 cGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGTGGTCATGGCCCTGTTGGGCGCgatgat                  <  1:1831069/150‑1 (MQ=255)
                                                                                                                                 cGCTGCACGCAAAGCCCGCCGGCCGCTTATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGGGGTCATGGCCCTGTTGGGCGCgatgat                  <  2:452520/150‑1 (MQ=25)
                                                                                                                                    tGCCCGCGAAGCATGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGTGGTCATGGCCCTGTTgg                            <  1:782868/137‑1 (MQ=255)
                                                                                                                                    tGCCCGCGAAGCATGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGTGGTCATGGCCCTGTTgg                            >  2:782868/1‑137 (MQ=255)
                                                                                                                                      cccGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGTGGTCATGGCCCt                                 <  1:619434/130‑1 (MQ=255)
                                                                                                                                      cccGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGTGGTCATGGCCCt                                 >  2:619434/1‑130 (MQ=255)
                                                                                                                                        cgcgAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGTGGTCATGGCCCTGTTGGGCGCGATGATCCTTTCg           >  1:536255/1‑150 (MQ=255)
                                                                                                                                        cgcgAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGTGGTCATGGCCCTGTTGGGCGCGATGATCCTTTCg           <  1:103513/150‑1 (MQ=255)
                                                                                                                                         gcgAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGTGGTCATGGCCCTGTTGGGCGCGATGATCCTTTCgg          <  2:2292648/150‑1 (MQ=255)
                                                                                                                                                 cGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGTGGTCATGGCCCTGTTGGGCGCGATGATCCTTTCGGTCAcgttc  >  1:97053/1‑150 (MQ=255)
                                                                                                                                                 |                                                                                                                                                     
GCTGGACTTCGGCATCATCGTCGACGGCGCGGTGGTGATCGTGGAAAACGCCATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTGACCGGGGTCGAGGGCAAGATGTTCCACCCTATGGCCTTTACCGTGGTCATGGCCCTGTTGGGCGCGATGATCCTTTCGGTCACGTTC  >  NC_002947/2754917‑2755211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: