| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,218,837 | A→T | 8.8% | V155D (GTC→GAC) | nfxB ← | HTH‑type transcriptional regulator NfxB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,218,837 | 0 | A | T | 8.8% | 228.8 / 12.7 | 80 | V155D (GTC→GAC) | nfxB | HTH‑type transcriptional regulator NfxB |
| Reads supporting (aligned to +/- strand): ref base A (37/36); new base T (3/4); total (40/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.25e-01 | |||||||||||
CCACTTGGCCCCAGGGATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGCCCGCCACGGGCGGTTCGTCTCGCTGTCGTCG > NC_002947/3218689‑3218986 | ccACTTGGCCCCAGGGATCGATGCCCTGGGGTTTTTTTGGCCGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATc‑gac > 2:1830375/1‑150 (MQ=255) cACTTGGCCCCAGGGATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATc‑gacg > 2:258796/1‑150 (MQ=255) aCTTGGCCCCAGGGATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGTCGCCCGCCCGCGTCG‑TTCGGCATc‑gacga > 2:2123771/1‑150 (MQ=255) aCTTGGCCCCAGGGATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATc‑gacga < 2:434013/150‑1 (MQ=255) aCTTGGCCCCAGGGATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTAACGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATc‑gacga > 1:2262945/1‑150 (MQ=255) ttGGCCCCAGGGATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCTGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATg > 1:1725273/1‑150 (MQ=255) cccAGGGATCGATGCACGGAGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTa > 1:2302259/1‑150 (MQ=255) ccAGGGATCGATGCCCTGGGGTTTTTTTTTCTTTTTAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGTCGTCCCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑CACGATGCAGtcc > 2:838944/1‑148 (MQ=255) ccAGGGATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAACGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TACGGCATC‑GTCGATGCCGAac < 1:636312/150‑1 (MQ=255) ccAGGGATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TACGGCATC‑GTCGATGCCgaa < 2:860105/149‑3 (MQ=255) ccAGGGATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TACGGCATC‑GTCGATGCCgaa > 1:860105/1‑147 (MQ=255) gggATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACAcc > 2:985683/1‑150 (MQ=255) gATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCAAACGGGGTCCTCATCAACGTCGAGGAAAAGCAGCTCGTTCTTTATCTGTGAGTTCGCGCTTGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GAAGATGCAGTACACCATGC‑Tc > 1:1112961/1‑150 (MQ=255) aTGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCa < 1:963212/150‑1 (MQ=255) cccTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGa < 1:1904234/150‑1 (MQ=255) ccTGGGGTTTTGTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGaa < 1:717788/150‑1 (MQ=255) tttttttGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCTCGGACGTCGCGCTGGCCGCGCGGACG‑GTAGAAATGCCGGC‑TACGATGCCGTACACCATGC‑TCAGGAACATTTCg > 1:1686091/1‑150 (MQ=255) tttttGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTGCgtt < 2:2262945/150‑3 (MQ=255) tttGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGa < 1:1890053/150‑1 (MQ=255) tgggCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGaa < 1:1699510/148‑1 (MQ=255) gCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGAt > 2:1916421/1‑150 (MQ=255) cTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATc < 2:2183789/150‑1 (MQ=255) tGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATcg > 1:1408276/1‑150 (MQ=255) ggTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATcgc < 2:691800/150‑1 (MQ=255) gTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATcgcc > 2:1945073/1‑150 (MQ=255) tGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGACA‑AT‑GGCGCCTGACGGTGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATcgccg > 2:653063/1‑150 (MQ=255) aaGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TACGGCATC‑GTCGATGCCgaac > 2:710681/1‑111 (MQ=255) aaGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TACGGCATC‑GTCGATGCCGAac < 1:710681/114‑1 (MQ=255) cAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGCACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGa < 1:1830375/150‑1 (MQ=255) aGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGat > 2:1577866/1‑150 (MQ=255) cgagcgGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATa < 2:1408276/150‑1 (MQ=255) cgagcgGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TACGGCATC‑GTCGATGCCga > 2:92511/1‑99 (MQ=255) cgagcgGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TACGGCATC‑GTCGATGCCga < 1:92511/100‑2 (MQ=255) tcgacggTGCTGCGGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGTCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATAc > 2:1948820/6‑150 (MQ=255) gagcgGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATAc < 1:838267/150‑1 (MQ=255) gcgGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACgg < 1:838944/150‑1 (MQ=255) gTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAg < 1:258796/150‑1 (MQ=255) gcagcaCCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACAttt > 1:1837268/1‑109 (MQ=255) gcagcaCCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACAttt < 2:1837268/109‑1 (MQ=255) aCCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCctg < 1:1252016/150‑1 (MQ=255) ccGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCAGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGCAGATCGCCGCGCTGATATCCATACGGAAAGCCCCCGCctgc > 2:1007154/1‑150 (MQ=255) cggcGAGGAAAAGCAGCGCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCctgct < 2:1112961/147‑1 (MQ=255) cGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGa < 1:720726/111‑1 (MQ=255) cGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGa > 2:720726/1‑111 (MQ=255) ggAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTCCACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCcgc > 1:1102594/1‑150 (MQ=255) gAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCcgcg > 2:2105077/1‑150 (MQ=255) agcagcTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAgg < 1:2010875/150‑1 (MQ=255) gcagcTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATcgcc < 1:1951998/104‑1 (MQ=255) gcagcTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATcgcc > 2:1951998/1‑104 (MQ=255) cagcTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGCGTCA‑ACAGAGGGCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGgaa > 1:735025/1‑150 (MQ=255) tCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGaagaag < 1:985683/150‑1 (MQ=255) tCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGaagaag > 1:2254043/1‑150 (MQ=255) tCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGaagaag > 1:675121/1‑150 (MQ=255) cAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACAcc > 1:1095183/1‑67 (MQ=255) cAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACAcc < 2:1095183/67‑1 (MQ=255) cAGCGTTTGCACGGACGTCGCGCCGGCCGCCCGCCCGCGTCG‑TTCGGCCTC‑GACGATGCCGTCCACCATGC‑TCAGGACAATTGCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGc < 1:1916421/150‑1 (MQ=255) cGTTTGCACGGACGTCACGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATc > 1:2295301/1‑150 (MQ=255) ttGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAg < 2:1686091/150‑1 (MQ=255) gCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGc > 1:1802161/1‑142 (MQ=255) gCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGc < 2:1802161/142‑1 (MQ=255) aCGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCa > 1:341850/1‑130 (MQ=255) aCGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCa < 2:341850/130‑1 (MQ=255) aCGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGc < 1:1966463/140‑1 (MQ=255) aCGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGc > 2:1966463/1‑140 (MQ=255) ggACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTc > 1:2256686/1‑150 (MQ=255) acgcTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAg < 2:2295301/149‑1 (MQ=255) cgcTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAgg > 2:297334/1‑150 (MQ=255) gcTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGACGCCCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGc > 2:1937246/1‑150 (MQ=255) gcccgcccgcGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGCCCGCCAc > 2:1655705/1‑150 (MQ=255) ccgcccgcGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGaagaag < 1:1273241/118‑1 (MQ=255) ccgcccgcGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGaagaag > 2:1273241/1‑118 (MQ=255) cccgcGTCG‑TTCGGCATC‑GACGATGCCGTACACCCTGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGCCCGCCACGGGCg < 2:1102594/150‑1 (MQ=255) cgcgTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGCCCGCCACGGGCggg > 1:1809183/1‑149 (MQ=255) gcgTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCGCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGCCCGCCACGGGCGGtt < 2:780525/150‑1 (MQ=255) cgtcg‑tTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGCCCGCCACGGGCGGTTc < 1:1577866/150‑1 (MQ=255) cgtcg‑tTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGCCCGCCACGGGCGGTTc < 1:1781557/150‑1 (MQ=255) cgtcg‑tTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGACGCCGGCATAGGCCCGCCACGGGCGGTTc < 1:653063/150‑1 (MQ=255) tcg‑tTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGCCCGCCACGGGCGGTTCGt > 2:2033504/1‑150 (MQ=255) g‑tTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGc > 2:2035587/1‑79 (MQ=255) g‑tTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGc < 1:2035587/79‑1 (MQ=255) g‑tTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGCCCGCCACGGGCGGTTCGtct > 1:84878/1‑150 (MQ=255) gCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGcc < 2:1214449/75‑1 (MQ=255) gCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGcc > 1:1214449/1‑75 (MQ=255) gCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGCCCGCCACGGGc < 1:838978/136‑1 (MQ=255) gCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGCCCGCCACGGGc > 2:838978/1‑136 (MQ=255) acgaTGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAgg > 2:1925859/1‑105 (MQ=255) acgaTGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAgg < 1:1925859/105‑1 (MQ=255) acgaTGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGCCCGCCACGGGCGGTTCGTCTCGCTGtcgtcg > 1:968506/1‑150 (MQ=255) | CCACTTGGCCCCAGGGATCGATGCCCTGGGGTTTTTTTGGCTGGTGAAGGCAGGTCAGCGAGCGGGTGCCGCAGCACCGTCGAGGAAAAGCAGCTCCAGCGTTTGCACGGACGTCGCGCTGGCCGCCCGCCCGCGTCG‑TTCGGCATC‑GACGATGCCGTACACCATGC‑TCAGGAACATTTCGGTGAAGATCGCCGCGCTGATATCGATACGGAAAGCCCCCGCCTGCTGGCCGCGCAGGAAGAAGGCATCCAGGGCGTCGGCATAGGCCCGCCACGGGCGGTTCGTCTCGCTGTCGTCG > NC_002947/3218689‑3218986 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |