| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,534,820 | C→A | 5.7% | intergenic (+64/‑91) | atoB → / → PP_3124 | 3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,534,820 | 0 | C | A | 5.7% | 277.5 / 4.1 | 87 | intergenic (+64/‑91) | atoB/PP_3124 | 3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter |
| Reads supporting (aligned to +/- strand): ref base C (42/40); new base A (2/3); total (44/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.69e-01 | |||||||||||
TCAGCGTCGAGGAAATCATCGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACAGCCGCTCCGCGCGCTTTGCCTTGCGCTGCTCCAACT > NC_002947/3534680‑3534968 | tCAGCGTCGAGGAAATCATCGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTcgc < 1:1248162/150‑1 (MQ=255)tCAGCGTCGAGGAAATCATCGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTA‑ACCGCCGCATTcgc < 2:466105/150‑1 (MQ=255)tCAGCGTCGAGGAAATCATCGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑ACGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTcgc < 1:1951347/150‑1 (MQ=255) cAGCGTCGAGGAAATCATCGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGCTTACCCGCGAATGCGGCGGT‑CAATGTACCGACGCATTcgcg < 1:1534541/150‑1 (MQ=37) aGCGTCGAGGAAATCATCGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCgg < 1:2320436/150‑1 (MQ=255) aGCGTCGAGGAAATCATCGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGGCGGT‑CAATGTACCGACGCATTCGCgg < 2:724662/150‑1 (MQ=38) gCGTCGAGGAAATCATCGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCggg < 2:2097171/150‑1 (MQ=255) tCGAGGAAATCATCGAGAAAACCGCCGGCAAACTGATCGGGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTaa < 1:333034/150‑1 (MQ=255) gAGGAAATCATCGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTATGCGCGTGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGc < 2:673159/150‑1 (MQ=255) gAAATCATCGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTg > 2:309958/1‑150 (MQ=255) atcagtgagcAAACCGACCGCAACCACATCCTGCAGGAAGAAGTGCAGGCAAAGCCCTTCCA‑AGGCCTCACGTGCTCCCGTCCTGTAGGCCCGGGTTTACCCGCGGATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTc < 2:1654082/144‑1 (MQ=255) gagaAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGtt > 1:1062379/1‑143 (MQ=255) gagaAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGtt < 2:1062379/143‑1 (MQ=255) gagaAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAg > 1:700158/1‑150 (MQ=255) gaAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGGAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCAGTTGGGGGTAAGCCTGTTCCTACAGGt > 1:2112855/1‑150 (MQ=255) gaAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTAGATTG‑ACCGCCGCGTTCTCGGGTGAGCCTGTTCCTACAggc > 2:1191808/1‑149 (MQ=255) ggCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑Accgc < 2:1970392/109‑1 (MQ=255) ggCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑Accgc > 1:1970392/1‑109 (MQ=255) ggCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGtt < 2:884743/150‑1 (MQ=255) gCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTg > 2:605320/1‑150 (MQ=255) gCAAACTGATCGTGCCGGATGATGTGAAGG‑GATGACCTTCTA‑AGGCATGACCTTGTTTCAACCTGTTGGCGCGGGTTTACCCGCGAATGCGTCCGTACATTG‑ACCGCCGGATTCCCGGGGAAGCCTTTTTCTACCGGTTTTTTTCGTTGc > 2:1397256/1‑150 (MQ=255) aaaCTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGc > 1:1181059/1‑123 (MQ=255) aaaCTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGc < 2:1181059/123‑1 (MQ=255) aaaCTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGcc < 2:428221/150‑1 (MQ=255) aaaCTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGcc > 2:1455668/1‑150 (MQ=255) aCTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTcgcg > 2:657258/1‑114 (MQ=255) aCTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTcgcg < 1:657258/114‑1 (MQ=255) aCTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTg < 2:1382453/150‑1 (MQ=255) aCTGATCGTCGCGGATGATATGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCTGGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTg < 2:28026/150‑1 (MQ=39) cTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGGGGCTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTgg < 1:1897023/150‑1 (MQ=255) tGATCGTGCCGGATGATGTGAAGGAAATGAGCTTCTA‑AAGCATCACGTGATCTCACCTTTTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATCG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGc < 1:359752/150‑1 (MQ=39) cGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATa < 1:1455668/150‑1 (MQ=255) tGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAgg < 2:1254060/126‑1 (MQ=255) tGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAgg > 1:1254060/1‑126 (MQ=255) ccGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGc < 2:559706/150‑1 (MQ=255) cGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCCTGTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCt > 1:122620/1‑150 (MQ=255) gatgatGTGAAGGAAATGACCTTCTA‑ANGCATGACGTGATNTCACCCNGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTc > 1:2252347/1‑150 (MQ=255) atgatgTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑Accgccg < 1:1559437/92‑1 (MQ=255) atgatgTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑Accgccg > 2:1559437/1‑92 (MQ=255) atgatgTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCa > 1:267947/1‑150 (MQ=255) tgAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCAt < 1:1500840/150‑1 (MQ=255) aGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTgg < 1:148235/128‑1 (MQ=255) aGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTgg > 2:148235/1‑128 (MQ=255) aTGACCTTCTACAGGC‑TGACGCGATCTTACGCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCaa < 2:2252347/150‑1 (MQ=38) ccTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATaaa > 1:1169871/1‑150 (MQ=255) cTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGTGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATaaaa < 2:1408628/150‑1 (MQ=255) cTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATaaaa > 1:1730857/1‑150 (MQ=255) ttCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATc < 1:1307468/132‑1 (MQ=255) ttCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATc > 2:1307468/1‑132 (MQ=255) gCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTg < 1:1016652/105‑1 (MQ=255) gCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTg > 2:1016652/1‑105 (MQ=255) cATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCaa > 2:1793122/1‑150 (MQ=255) aTGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCTGCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAAc > 2:1553210/1‑150 (MQ=255) aTGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAAc > 2:1826718/1‑150 (MQ=255) aCGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAActga > 1:2338385/1‑147 (MQ=255) gTGATCTCAACCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACCGGTTTTTTGTGGTGCCTGGCAATACCACTTCCTACCATACCACCAATAACAGGAATTCAACAGTgg > 2:214573/1‑150 (MQ=37) tGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATCAAAGGAATTCAACCGTGGc < 1:1168144/150‑1 (MQ=255) gATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGcc > 1:1170188/1‑150 (MQ=255) tctcACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGc > 1:980484/1‑150 (MQ=255) cACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATc > 2:718424/1‑111 (MQ=255) cACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATc < 1:718424/111‑1 (MQ=255) aCCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGaa > 2:386519/1‑150 (MQ=255) ccTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCATGAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAAt > 1:1191677/1‑150 (MQ=255) cTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAAtt > 2:2035055/1‑150 (MQ=255) tGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTc > 1:1335077/1‑150 (MQ=255) tGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTc < 2:1170188/150‑1 (MQ=255) tAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCaa < 1:1397256/150‑1 (MQ=255) tAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCaa < 2:1335077/150‑1 (MQ=255) tAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCaa < 1:1793122/150‑1 (MQ=255) gcgcGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGAc > 1:1569929/1‑150 (MQ=255) cgcgGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACa > 2:982237/1‑150 (MQ=255) gggTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACAGcc > 1:295938/1‑150 (MQ=255) ggTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCACTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACAGCCg < 1:1550462/150‑1 (MQ=255) cccGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGTGTTTTCTTGCAATACCGCTTCATACCATAAAACCAATAACAGCAATTCATCGTTGGCCGCTGAAATTCAAGACAGCCGCTCcgc > 2:2300876/1‑150 (MQ=255) ccGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAAt < 2:220915/111‑1 (MQ=255) ccGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAAt > 1:220915/1‑111 (MQ=255) ccGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACAGCCGCTCcgcg > 1:853884/1‑150 (MQ=255) ccGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGCTCAGCAACCGTGGCCGCTGAAATTCAAGACAGCCGCTCcgcg > 1:1778067/1‑150 (MQ=255) ccGCGAATGCGGCGGTCAATGT‑ACCGACGCATTCGCGGGTAAACCCGCGCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCCTCCCATACAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACAGCCGCTCcgcg > 2:582865/1‑150 (MQ=21) gcgAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCa < 2:816708/90‑1 (MQ=255) gcgAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCa > 1:816708/1‑90 (MQ=255) gcgAATGCGGCGGT‑CAATGTACCGACGCATTCGCGGGTAAACCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCaa > 2:2304997/1‑133 (MQ=37) gcgAATGCGGCGGT‑CAATGTACCGACGCATTCGCGGGTAAACCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCaa < 1:2304997/133‑1 (MQ=37) aTGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACAGCCGCTCCGCGCGCttt < 2:295938/150‑1 (MQ=255) tGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACAGCCGCTCCGCGCGCTTTg < 2:122620/150‑1 (MQ=255) gTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACAGCCGCTCCGCGCGCTTTGCCt > 1:2004868/1‑150 (MQ=255) tCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCATTGACGCTGAAATTCAAGACAGCAGCTCCGCGCGCTTTGCCtt > 1:251116/1‑150 (MQ=255) aTTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACAGCCGCTCCGCGCGCTTTGCCTTGCgctgc < 2:267947/150‑1 (MQ=255) ttG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTg < 1:1425465/54‑1 (MQ=255) ttG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTg > 2:1425465/1‑54 (MQ=255) aCCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACAGCCGCTCCGCGCGCTTTGCCTTGCGCTGCTCCa < 1:1553210/150‑1 (MQ=255) gccgcATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACAGCCGCTCCGCGCGCTTTGCCTTGCGCTGCTCCAACt > 1:2282591/1‑150 (MQ=255) ccgcATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGc > 2:1644489/1‑44 (MQ=255) ccgcATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGc < 1:1644489/44‑1 (MQ=255) ccgcATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATcc < 1:1424805/64‑1 (MQ=255) ccgcATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATcc > 2:1424805/1‑64 (MQ=255) | TCAGCGTCGAGGAAATCATCGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTA‑AGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTG‑ACCGCCGCATTCGCGGGTAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACAGCCGCTCCGCGCGCTTTGCCTTGCGCTGCTCCAACT > NC_002947/3534680‑3534968 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |