Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,762,985 A→T 5.4% N62I (AAC→ATC)  PP_3326 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,762,9850AT 5.4% 341.6 / 8.2 112N62I (AAC→ATC) PP_3326hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (51/53);  new base T (2/4);  total (54/58)
Fisher's exact test for biased strand distribution p-value = 6.80e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.63e-01

Only 100 of 114 total aligned reads displayed.

CCTGATGGTCAGCGTCAACGCAGGCGCCCACGGCCTGTGGACCGAGGAGCGACGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGTCACAGCGCCCGGACAAGCAATGGGTCAATCAGGATCGCACCCATGTC  >  NC_002947/3762836‑3763133
                                                                                                                                                     |                                                                                                                                                    
cgtGAGGGTCAGCATCAACGCAGGCGCTCACGGACTGTGGATCTAGGAGCGACGTGGCAATACCGAGGCCGTGTACGGCAACGGTGTCGAGAATAACGTCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGTaa                                                                                                                                                      <  2:111115/148‑1 (MQ=255)
 cTGATGGTCAGCGTCAACGCAGGCGCCCACGGCCTGTGGACCGAGGAGCGACGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAAc                                                                                                                                                     >  1:2208387/1‑150 (MQ=255)
 cTGATGGTCAGCGTCAACGCAGGCGCCCACGGCCTGTGGACCGAGGAGCGACGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAAc                                                                                                                                                     >  1:353561/1‑150 (MQ=255)
  tGATGGTCAGCGTCAACGCAGGCGCCCACGGCCTGTGGACCGAGGAGCGACGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACa                                                                                                                                                    >  2:1726281/1‑150 (MQ=255)
  tGATGGTCAGCGTCAACGCAGGCGCCCACGGCCTGTGGACCGAGGAGCGACGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACa                                                                                                                                                    >  2:1608892/1‑150 (MQ=255)
  tGATGGTCAGCGTCAACGCAGGCGCCCACGGCCTGTGGACCGAGGAGCGACGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACa                                                                                                                                                    <  2:262420/150‑1 (MQ=255)
   gATGGTCAGCGTCAACGCAGGCGCCCACGGCCTGTGGACCGAGGAGCGACGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGATCAt                                                                                                                                                   <  2:361040/150‑1 (MQ=255)
       gTCAGCGTCAACGCAGGCGCCCACGGCCTGTGGACCGAGGAGCGACGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATc                                                                                                                                               <  1:1226220/150‑1 (MQ=255)
        acAGAGTCAACGCAGTCCCCCACGGCCTGTTGACCGAGGAGCACCTTGGCAATATCGAGGCCGTGTACGGCCACGGCACCGACGATAACGCCTACAACGCGGAAAAGAGCAAGCGCGCCTGAGCGTCCTACGTAACCGGGAACatcatca                                                                                                                                              >  2:1733089/2‑149 (MQ=255)
          aGCGTCAACGCAGGCGCCCACGGCCTGTGGACCGAGGAGCGACGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCg                                                                                                                                            <  1:2245094/150‑1 (MQ=255)
            cGTCAACGCAGGCGCCCACGGCCTGTGGACCGAGGAGCGACGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGt                                                                                                                                          <  1:1534790/150‑1 (MQ=255)
                aaCGCAGGCGCCCACGGCCTGTGGACCGAGGAGCGACGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGTCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACg                                                                                                                                      <  1:457497/150‑1 (MQ=255)
                     aGGCGCCCACGGCCTGTGGACCGAGGAGCGACGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCACGGGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGa                                                                                                                                 >  1:142331/1‑150 (MQ=255)
                     aGGCGCCCACGGCCTGTGGACCGAGGAGCGACGCGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGa                                                                                                                                 <  2:713572/150‑1 (MQ=255)
                        cgcCCACGGCCTGTGGACCGAGGAGCGACGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAgcg                                                                                                                              >  1:316502/1‑150 (MQ=255)
                         gcCCACGGCCTGTGGACCGAGGAGCGACGTGGCAATATCGAGGCCGTGTACGGCCACGGAGCCGAGGATAACCCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGCTCACGGTCGAgcgc                                                                                                                             >  2:1052250/1‑150 (MQ=255)
                          cccACGGCCTGTGGACCGAGGAGCGAAGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGcc                                                                                                                            >  2:854540/1‑150 (MQ=255)
                           ccACGGCCTGTGGACCGAGGAGCGACGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCt                                                                                                                           >  2:1808562/1‑150 (MQ=255)
                             aCGGCCTGTGGACCGAGGAGCGACGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTgg                                                                                                                         >  2:2237787/1‑150 (MQ=255)
                                gCCTGTGGACCGAGGAGCGACGTGGCACGATGGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCAGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCgg                                                                                                                      >  1:427671/1‑150 (MQ=255)
                                 ccTGTGGACCGAGGAGCGACGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGa                                                                                                                     <  1:1726281/150‑1 (MQ=255)
                                   tgtgGACCGAGGAGCGACGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATc                                                                                                                   <  2:2048521/150‑1 (MQ=255)
                                          cGAGGAGCGACGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGt                                                                                                            <  1:332244/150‑1 (MQ=255)
                                           gaggagCGACGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGATCATGTTCCCGGTCACGTCGAACGcccaggc                                                                                                                       >  1:2326893/1‑132 (MQ=38)
                                           gaggagCGACGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGATCATGTTCCCGGTCACGTCGAACGcccaggc                                                                                                                       <  2:2326893/137‑6 (MQ=38)
                                             ggagCGACGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTAACGGTCGAGCGCCTGGCGGATCATGCCGtgct                                                                                                         <  1:1605019/150‑1 (MQ=255)
                                                  gACGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAAc                                                                                                    <  1:1904316/150‑1 (MQ=255)
                                                   aCGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCg                                                                                                                                            <  2:1372931/109‑1 (MQ=255)
                                                   aCGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCg                                                                                                                                            >  1:1372931/1‑109 (MQ=255)
                                                   aCGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAAcc                                                                                                   >  2:1490240/1‑150 (MQ=255)
                                                      tGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACt                                                                                                >  2:139736/1‑150 (MQ=255)
                                                        gCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTa                                                                                              <  1:883620/150‑1 (MQ=255)
                                                          aaTATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGCTTGCGGGCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTAcc                                                                                            >  1:1310123/1‑150 (MQ=255)
                                                          aaTATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATg                                                                                                                <  2:1518091/130‑1 (MQ=255)
                                                          aaTATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATg                                                                                                                >  1:1518091/1‑130 (MQ=255)
                                                            tatCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTAcccc                                                                                          <  1:1608892/150‑1 (MQ=255)
                                                               cGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTCGTTTGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGcc                                                                                       <  1:1776645/150‑1 (MQ=255)
                                                                  ggCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGa                                                                                                                                 <  1:669668/105‑1 (MQ=255)
                                                                  ggCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGa                                                                                                                                 >  2:669668/1‑105 (MQ=255)
                                                                  ggCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGc                                                                                    >  2:559986/1‑150 (MQ=255)
                                                                    ccGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCgg                                                                                  <  1:1379141/150‑1 (MQ=255)
                                                                     cGTGTACGGCCACGGCGCCGAGGATAACTCCCACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGc                                                                                 >  2:1440326/1‑150 (MQ=255)
                                                                     cGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCGGGTCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGc                                                                                 >  2:672097/1‑150 (MQ=255)
                                                                      gtgtACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGATCATg                                                                                                                                                  <  2:492753/84‑1 (MQ=255)
                                                                      gtgtACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAGCATg                                                                                                                                                  >  1:492753/1‑84 (MQ=255)
                                                                         tACGGCCACGGTGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGc                                                                                                                        <  1:1568822/107‑1 (MQ=255)
                                                                         tACGGCCACGGTGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGc                                                                                                                        >  2:1568822/1‑107 (MQ=255)
                                                                         tACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACtt                                                                             <  2:353561/150‑1 (MQ=255)
                                                                                aCGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGtgc                                                                      >  1:682222/1‑150 (MQ=255)
                                                                                     gcCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCa                                                                                <  1:107353/135‑1 (MQ=255)
                                                                                     gcCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGctgctg                                                                 <  1:780766/150‑1 (MQ=255)
                                                                                     gcCGAGGATAACGCCTACAACGCGGAAAAGACCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCAGGGTCGAGAGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGctgctg                                                                 <  1:1733089/150‑1 (MQ=255)
                                                                                        gAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGATCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGAc                                                              >  2:883165/1‑150 (MQ=255)
                                                                                         aGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACa                                                             >  1:1411655/1‑150 (MQ=255)
                                                                                           gATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCATGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAAc                                                           <  1:1986960/150‑1 (MQ=255)
                                                                                           ccaacgcccTACAGGGCGGAAAAGATCAACGCCGCCGGGCAGTTCTCGTTGACTGGGACCATATACCGGGCAACGTCGAACGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACg                                                          <  1:502219/143‑1 (MQ=255)
                                                                                            aTAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGCACGTGCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGTATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACg                                                          <  1:614031/150‑1 (MQ=255)
                                                                                             tAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACgg                                                         <  1:848084/150‑1 (MQ=255)
                                                                                                cGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTAc                                                                                             >  1:1478128/1‑111 (MQ=255)
                                                                                                cGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTAc                                                                                             <  2:1478128/111‑1 (MQ=255)
                                                                                                 gCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCt                                                     >  1:185251/1‑150 (MQ=255)
                                                                                                   cTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTg                                                   <  2:1411655/150‑1 (MQ=255)
                                                                                                    tACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGa                                                               >  2:1945128/1‑137 (MQ=255)
                                                                                                    tACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGa                                                               <  1:1945128/137‑1 (MQ=255)
                                                                                                     aCAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGCACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGt                                                 <  1:1674824/150‑1 (MQ=255)
                                                                                                     aCAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGt                                                 >  2:296108/1‑150 (MQ=255)
                                                                                                       aaGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGa                                                                                                                                 >  2:307267/1‑68 (MQ=255)
                                                                                                       aaGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGa                                                                                                                                 <  1:307267/68‑1 (MQ=255)
                                                                                                       aaGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGTca                                               >  1:1638423/1‑150 (MQ=255)
                                                                                                         ggCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGATCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGTcaca                                             <  1:883165/150‑1 (MQ=255)
                                                                                                         ggCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTAcccc                                                                                          >  2:463379/1‑105 (MQ=255)
                                                                                                         ggCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTAcccc                                                                                          <  1:463379/105‑1 (MQ=255)
                                                                                                         ggCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCCGCTGGACAACGGGCCTTGGTcaca                                             >  2:345288/1‑150 (MQ=255)
                                                                                                             gAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGTCACAgcgc                                         >  1:1087680/1‑150 (MQ=255)
                                                                                                              aaaaGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGTCACAGCGcc                                        >  2:1078988/1‑150 (MQ=255)
                                                                                                               aaaGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGTCACAGCGccc                                       <  2:1378940/150‑1 (MQ=255)
                                                                                                                  gATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGTCACAGCGCCCGGa                                    >  2:287916/1‑150 (MQ=255)
                                                                                                                   aTCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGTCACAGCGCCCGGAc                                   >  1:946583/1‑150 (MQ=255)
                                                                                                                      aaGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGTCACAGCGCCCGGACAAg                                <  1:2237787/150‑1 (MQ=255)
                                                                                                                      aaGCGCGCCTGGGCGTTCGACGTGACCAGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGTCACAGCGCCCGGACAAg                                <  2:427671/150‑1 (MQ=255)
                                                                                                                        gcgcgcCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGTCACAGCGCCCGGACAAGCa                              >  1:2049867/1‑150 (MQ=255)
                                                                                                                            gcCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTCCCCCGCCTGCGGCACTTGCCATGCTGCTGGACAACGGGCCTTGGTCACAGCGCCCGGACAAGCAATgg                          <  2:1310123/150‑1 (MQ=255)
                                                                                                                            gcCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGTCACAGCGCCCGGACAAGCAATgg                          >  1:705690/1‑150 (MQ=255)
                                                                                                                            gcCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGTCACAGCGCCCGGACAAGCAATgg                          <  1:296108/150‑1 (MQ=255)
                                                                                                                              cTGGGCGTTCGACGTGACCGGGAACATGATCCCGGt                                                                                                                                          <  1:1684474/36‑1 (MQ=255)
                                                                                                                              cTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGTCACAGCGCCCGGACAAGCCACGGGt                        <  2:682222/150‑1 (MQ=255)
                                                                                                                              cTGGGCGGTAGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTGCCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGTCACAGCGCCCGGACAAGCAATGGGt                        <  2:246598/150‑1 (MQ=255)
                                                                                                                                   cGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTg                                                   <  2:1838056/118‑1 (MQ=255)
                                                                                                                                   cGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTg                                                   >  1:1838056/1‑118 (MQ=255)
                                                                                                                                   cGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGTCACAGCGCCCGGACAAGCAATGGGTCAATc                   <  2:1952131/150‑1 (MQ=255)
                                                                                                                                        gACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGTCACAGCGCCCGGACAAGCAATgg                          <  1:1419708/138‑1 (MQ=255)
                                                                                                                                         aCGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCCGCTGGACAACGGGCCTTGGTCACAGCGCCCGGACAAGCAATGGGTCAATCAGGATc             <  1:345288/150‑1 (MQ=255)
                                                                                                                                          cGTGACCGGGATCATGTTCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTg                                                   <  1:1587990/111‑1 (MQ=255)
                                                                                                                                          cGTGACCGGGATCATGTTCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTg                                                   >  2:1587990/1‑111 (MQ=255)
                                                                                                                                           gTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGTCACAGCGCCCGGACAAGCAATGGGTCAATCAGGATCGc           <  1:1490240/150‑1 (MQ=255)
                                                                                                                                             gACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGTCACAGCGCCCGGACAAGCAATGGGTCAATCAGGATCGCAc         >  1:2308814/1‑150 (MQ=255)
                                                                                                                                              aCCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACCACCGGCCTTGGTCACAGCGCCCGGACAAGCAATGGGTCAATCAGGATCGCAcc        >  1:1093927/1‑150 (MQ=255)
                                                                                                                                              aCCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGTCACAGCGCCCGGACAAGCAATGGGTCAATCAGGATCGCAcc        <  2:705690/150‑1 (MQ=255)
                                                                                                                                                  ggAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGTCACAGCGCCCGGACAAGCAATGGGTCAATCAGGATCGCACCCATg    >  1:1292465/1‑150 (MQ=255)
                                                                                                                                                    aaCATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGTCACAGCGCCCGGACAAGCAATGGGTCAATCAGGATCGCACCCATGTc  <  1:559986/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
CCTGATGGTCAGCGTCAACGCAGGCGCCCACGGCCTGTGGACCGAGGAGCGACGTGGCAATATCGAGGCCGTGTACGGCCACGGCGCCGAGGATAACGCCTACAAGGCGGAAAAGATCAAGCGCGCCTGGGCGTTCGACGTGACCGGGAACATGATCCCGGTCACGGTCGAGCGCCTGGCGGATCATGCCGTGCTGCAACCACTTACCCCGCCTGCGGCACTTGCCGTGCTGCTGGACAACGGGCCTTGGTCACAGCGCCCGGACAAGCAATGGGTCAATCAGGATCGCACCCATGTC  >  NC_002947/3762836‑3763133

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: