| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,399,267 | G→A | 5.1% | P223S (CCG→TCG) | PP_3878 ← | minor capsid protein C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,399,267 | 0 | G | A | 5.1% | 237.2 / 2.3 | 79 | P223S (CCG→TCG) | PP_3878 | minor capsid protein C |
| Reads supporting (aligned to +/- strand): ref base G (35/40); new base A (2/2); total (37/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.51e-01 | |||||||||||
ATGGCGGAGGAGCCGCGATAACAGGCAGCCTCGGTGGCGATGATGTCCGCAACATCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCATGTGACTGGCCACCACACCGATGGACCCTACACCGGAGGTCAGGCTAACCACGACTTCAG > NC_002947/4399119‑4399416 | aTGGCGGAGGAGCCGCGATAACAGGCAGCCTCGGTGGCGATGATGTCCGCAACATCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGc < 2:35428/150‑1 (MQ=255)aTGGCGGAGGAGCCGCGATAACAAGCAGCCTCGGTGGCGATGATGTCCGCAACATCACGGCCGCGGTATTCGGCAACGTGGGGCGTGAACAGCTGATAGCTTTCTGGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGc > 2:1685662/1‑150 (MQ=255) ggCGGAGGAGCCGCGATAACAGGCAGCCTCGGTGGCGATGATGTCCGCAACATCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTc < 2:1303946/150‑1 (MQ=255) gagCCGCGATAACAGGCAGCCTCGGTGGCGATGATGTCCGCAACATCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCggg > 1:1050098/1‑150 (MQ=255) gagCCGCGATAACAGGCAGCCTCGGTGGCGATGATGTCCGCAACATCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCggg > 2:519876/1‑150 (MQ=255) cgcgATAACAGGCAGCCTCGGTGGCGATGATGTCCGCAACATCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCa < 2:1404776/150‑1 (MQ=255) cgcgATAACAGGCAGCCTCGGTGGCGATGATGTCCGCAACATCACGGCAGCTGGAGTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCa < 1:1310524/150‑1 (MQ=255) aaCAGGCAGCCTCGGTGGCGATGATGTCCGCAACATCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCAt > 1:1820962/1‑150 (MQ=255) aGGCAGCCTCGGTGGCGATGATGTCCGCAACATCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCgg > 2:2315761/1‑136 (MQ=255) aGGCAGCCTCGGTGGCGATGATGTCCGCAACATCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCgg < 1:2315761/136‑1 (MQ=255) ggCAGCCTCGGTGGCGATGATGTCCGCAACATCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCAttttt < 2:1326700/150‑1 (MQ=255) aGCCTCGGTGGCGATGATGTCCGCAACATCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTtgtg < 2:342809/150‑1 (MQ=255) ccTCGGTGGCGATGATGTCCGCAACATCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTtgtgtg > 1:608876/1‑150 (MQ=255) gTGGCGATGATGTCCGCAACATCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCg > 2:2029819/1‑150 (MQ=255) gatgatGTCCGCAACATCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCaaa > 2:674079/1‑150 (MQ=255) gatgatGTCCGCAACATCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCaaa < 1:240979/150‑1 (MQ=255) tgatgTCCGCAACATCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGa < 1:1065500/150‑1 (MQ=255) atgTCCGCAACATCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGAcc > 1:1534837/1‑150 (MQ=255) tCCGCAACATCACGGCCGCGGTATTCGGCAACGTGGTTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGtt < 1:519876/150‑1 (MQ=255) tCCGCAACATCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAGGACCGtg > 2:1334021/1‑149 (MQ=255) tCCGCAACATCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGtt < 2:608876/150‑1 (MQ=255) cGCAACATCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTtgt < 1:674079/150‑1 (MQ=255) cGCAACATCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACGTGCAGAGATTGCCAGGCATGCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTtgt < 1:1334021/150‑1 (MQ=255) cAACATCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGa < 2:1534837/150‑1 (MQ=255) aaCATCACGGCCGCGTTATTCTGAAACTGCGGTCGTCAACCGCTATTAGCTTTCTTTCACAACTTCCTTAGTC‑ACTTGCAGATATTTCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGGCCGTTGTGAc < 2:722636/150‑1 (MQ=255) aTCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTTGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCtt < 2:903896/150‑1 (MQ=255) cgcgGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCa > 1:1978940/1‑150 (MQ=255) gcgGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCAt < 1:764368/150‑1 (MQ=255) gcgGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGCTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCAt < 1:407314/150‑1 (MQ=255) ggTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGc < 1:2306912/150‑1 (MQ=255) ggTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGc > 2:269887/1‑150 (MQ=255) ttCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTc < 1:140124/150‑1 (MQ=255) tCGGCAACGTGGGTCGTGAACAGCTGATCGCTTTCATCTTGGTGTTC‑TTGTGCGACCTGCAGAGATTGCTCCGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCg < 1:1685662/150‑1 (MQ=255) tCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCg < 2:1820962/150‑1 (MQ=255) gCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGatc < 2:1978940/150‑1 (MQ=255) gTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGa > 1:1153077/1‑113 (MQ=255) gTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGa < 2:1153077/113‑1 (MQ=255) tGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTc > 2:1405912/1‑150 (MQ=255) gTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCATACCCATGCCTTCGATCATCTTCGAg < 2:1481863/150‑1 (MQ=255) tCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGc > 2:2026666/1‑150 (MQ=255) tGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAgg < 1:1242879/80‑1 (MQ=255) tGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAgg > 2:1242879/1‑80 (MQ=255) aCAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCa > 1:2083662/1‑150 (MQ=255) aCAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCa > 1:2299217/1‑150 (MQ=255) aGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTAGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCAtg < 2:388546/150‑1 (MQ=255) tttCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTgc > 1:2004767/1‑79 (MQ=255) tttCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTgc < 2:2004767/79‑1 (MQ=255) ttGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCATGTGACTGGCcaccac > 1:1357446/1‑150 (MQ=255) tGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCATGTGACTGGCCACcaca < 2:2299217/150‑1 (MQ=255) aCGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGCTCATCTTCGAGCGATCCATGTGACTGGCCACCACACCg > 1:839146/1‑150 (MQ=255) aCGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCATGTGACTGGCCACCACACCg > 2:2087333/1‑150 (MQ=255) aCGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCATGTGACTGGCCACCACACCg > 2:636846/1‑150 (MQ=255) cGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCATGTGACTGGCCACCACACCGa > 1:393431/1‑150 (MQ=255) gACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCATGTGACTg < 1:2235236/136‑1 (MQ=255) gACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCATGTGACTg > 2:2235236/1‑136 (MQ=255) gACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCATGTGACTGGCCACCACACCGAt < 2:2083662/150‑1 (MQ=255) gACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGACTCGTTCGGGCTCAGGTCAttttt > 1:514921/1‑63 (MQ=255) gACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGACTCGTTCGGGCTCAGGTCAttttt < 2:514921/63‑1 (MQ=255) cTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGtt > 1:2169198/1‑83 (MQ=255) cTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGtt < 2:2169198/83‑1 (MQ=255) ttCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGAGATCCATGTGACTGGCCACCACACCGATGGa > 2:759781/1‑150 (MQ=255) cGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCATGTGACTGGCCACCACACCGATGGAcc < 2:1050098/150‑1 (MQ=255) cGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCATGTGACTGGCCACCACACCGATGGAcc > 2:1255279/1‑150 (MQ=255) cGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCATGTGACTGGCCACCACACCGATGGAcc < 1:1405912/150‑1 (MQ=255) ttGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCATGTGACTGGCCACCACACCGATGGACCCTACACCGGa < 1:2029819/150‑1 (MQ=255) gCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCa < 2:522022/84‑1 (MQ=255) gCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCa > 1:522022/1‑84 (MQ=255) gCAGAGATTGCTCGGTAATCGACTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGAcc > 2:1326694/1‑65 (MQ=255) gCAGAGATTGCTCGGTAATCGACTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGAcc < 1:1326694/65‑1 (MQ=255) agagATTGCTCGGTAATCGGCTCGTTCGGGCTCCGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCATGTGACTGGCCACCACACCGATGGACCCTACACCGGAGGTc > 1:1337025/1‑150 (MQ=255) agagATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCAGTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCATGTGACTGGCCACCACACCGATGGACCCTACACCGGAGGTc > 1:931107/1‑150 (MQ=255) agagATTGCTCGGTAATAGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCATGTGACTGGCCACCACACCGATGGACCCTACACCGGAGGTc > 2:877083/1‑150 (MQ=255) gagaTTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCATGTGACTTGCCACCACACCGATGGACCCTACACCGGAGGTCa < 1:1353947/150‑1 (MQ=255) gagaTTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCATGTGACTGGCCACCACACCGATGGACCCTACACCGGAGGTCa > 2:1335279/1‑150 (MQ=255) gaTTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCATGTGACTGGCCACCACACCGATGGACCCTACACCGGAGGTCAgg < 2:1337025/150‑1 (MQ=255) cTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTgc < 1:1721129/42‑1 (MQ=255) cTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTgc > 2:1721129/1‑42 (MQ=255) tCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCATGTGACTGGCCACCACACCGATGGACCCTACACCGGAGGTCAGGCTAAcc > 1:1208045/1‑150 (MQ=255) aaTCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGAGATCCATGTGACTGGCCACCACACCGATGGACCCTACACCGGAGGTCAGGCTAACCACGAc < 1:759781/150‑1 (MQ=255) gCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCATGTGACTGGCCACCACACCGATGGACCCTACACCGGAGGTCAGGCTAACCACGACTTCAg > 2:620491/1‑150 (MQ=255) | ATGGCGGAGGAGCCGCGATAACAGGCAGCCTCGGTGGCGATGATGTCCGCAACATCACGGCCGCGGTATTCGGCAACGTGGGTCGTGAACAGCTGATAGCTTTCTTGCACGACTTCGTTGAGC‑ACTTGCAGAGATTGCTCGGTAATCGGCTCGTTCGGGCTCAGGTCATTTTTGTGTGCGCCGGCAAAGACCGTTGTGACCTTCACACCCATGCCTTCGATCATCTTCGAGCGATCCATGTGACTGGCCACCACACCGATGGACCCTACACCGGAGGTCAGGCTAACCACGACTTCAG > NC_002947/4399119‑4399416 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |