Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,451,668 C→T 7.1% P51S (CCG→TCG)  lnt → apolipoprotein N‑acyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,451,6680CT 7.1% 372.4 / 13.7 126P51S (CCG→TCG) lntapolipoprotein N‑acyltransferase
Reads supporting (aligned to +/- strand):  ref base C (56/61);  new base T (5/4);  total (61/65)
Fisher's exact test for biased strand distribution p-value = 7.38e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.38e-01

Only 100 of 129 total aligned reads displayed.

GTTGGATCACCCGCCCCGGCTGGCCCGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGCTGCTGGCGTTCTTCGCCGCACTGGCC  >  NC_002947/5451522‑5451817
                                                                                                                                                   |                                                                                                                                                     
gTTGGATCACCCGCCCCGGCTGGCCCGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCcgc                                                                                                                                                    <  1:1781761/150‑1 (MQ=255)
     aTCACCCGCCCCGGCTGGCCCGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAg                                                                                                                                               >  1:874930/1‑150 (MQ=255)
          ccGCCCCGGCTGGCCCGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCAt                                                                                                                                          >  1:2331736/1‑150 (MQ=255)
          ccGCCCCGGCTGGCCCGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCAt                                                                                                                                          >  2:1382226/1‑150 (MQ=255)
                    tGGCCCGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATgtggcgtggc                                                                                                                                >  1:220508/1‑150 (MQ=255)
                       cccGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCtgg                                                                                                                             <  1:610372/150‑1 (MQ=255)
                        ccGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCtggt                                                                                                                            <  1:2002774/150‑1 (MQ=255)
                          ggTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCtggtgg                                                                                                                          <  1:1257157/150‑1 (MQ=255)
                               ccTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTggtttgg                                                                                                                     <  2:2331736/150‑1 (MQ=255)
                               ccTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTggtttgg                                                                                                                     >  2:1273770/1‑150 (MQ=255)
                                ctgctgGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTggtttggg                                                                                                                    <  2:1732106/150‑1 (MQ=255)
                                ctgctgGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGAGCCAGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTggtttggg                                                                                                                    <  1:735618/150‑1 (MQ=255)
                                 tgctgGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTggtttgggt                                                                                                                   >  1:485430/1‑150 (MQ=255)
                                    tgGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTggtttgggtttg                                                                                                                <  1:1011959/150‑1 (MQ=255)
                                        ccTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTCGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCt                                                                                                            <  2:1352937/150‑1 (MQ=255)
                                         cTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTg                                                                                                           <  1:866537/150‑1 (MQ=255)
                                          tGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGt                                                                                                          <  1:1360210/150‑1 (MQ=255)
                                                 cGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTggtttgggt                                                                                                                   >  2:1237907/1‑134 (MQ=255)
                                                   gTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCg                                                                                                 >  2:561851/1‑150 (MQ=255)
                                                      cTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCa                                                                                              <  1:561851/150‑1 (MQ=255)
                                                       ttCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATgtggcgt                                                                                                                                   <  2:353294/112‑1 (MQ=255)
                                                       ttCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCtggtg                                                                                                                           <  1:1993201/120‑1 (MQ=255)
                                                       ttCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCtggtg                                                                                                                           >  2:1993201/1‑120 (MQ=255)
                                                       ttCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCAc                                                                                             >  1:231429/1‑150 (MQ=255)
                                                         ccACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGTTTTGGTCTGGATGGCGCCGGCAccg                                                                                           <  2:24839/150‑2 (MQ=255)
                                                           aCCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTGTGGGTTTGGCCTGTATGGCGCCGGCACCtgg                                                                                         >  2:2299489/1‑150 (MQ=255)
                                                            cccTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCtggt                                                                                        <  2:365133/150‑1 (MQ=255)
                                                             cctcctGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCTGCACCtggtg                                                                                       <  1:1382226/150‑1 (MQ=255)
                                                             cctcctGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCtggtg                                                                                       >  1:98388/1‑150 (MQ=255)
                                                             cctcctGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCtggtg                                                                                       >  1:768954/1‑150 (MQ=255)
                                                             actcctGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCtggtg                                                                                       >  1:1249495/2‑150 (MQ=255)
                                                               tcctGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGa                                                                                     <  1:1863753/150‑1 (MQ=255)
                                                               tcctGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGa                                                                                     <  2:768954/150‑1 (MQ=255)
                                                                 ctggcccaggcGTCATTCACCCTCTGACCCTTCACGTTGTTTTCCAGCTCTGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATc                                                                                   <  2:254943/150‑1 (MQ=255)
                                                                   ggccctggcGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCtgg                                                                                         >  2:852716/1‑142 (MQ=255)
                                                                   ggccctggcGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCtgg                                                                                         <  1:852716/142‑1 (MQ=255)
                                                                    gccctggcGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTTCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTAc                                                                                <  1:874112/150‑1 (MQ=255)
                                                                    gccctggcGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATgtggcgtggc                                                                                                                                >  1:1357020/1‑102 (MQ=255)
                                                                    gccctggcGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATgtggcgtggc                                                                                                                                <  2:1357020/102‑1 (MQ=255)
                                                                       ctggcGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTc                                                                             >  1:1457937/1‑150 (MQ=255)
                                                                        tggcGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCa                                                                            <  1:1273770/150‑1 (MQ=255)
                                                                         ggcGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCtg                                                                                          <  2:1700156/135‑1 (MQ=255)
                                                                         ggcGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCtg                                                                                          >  1:1700156/1‑135 (MQ=255)
                                                                         ggcGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAg                                                                           <  2:2022548/150‑1 (MQ=255)
                                                                            gcCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTggtttgggtttg                                                                                                                >  2:892998/1‑110 (MQ=255)
                                                                            gcCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTggtttgggtttg                                                                                                                <  1:892998/110‑1 (MQ=255)
                                                                            gcCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGAt                                                                                    <  1:681832/138‑1 (MQ=255)
                                                                            gcCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGAt                                                                                    >  2:681832/1‑138 (MQ=255)
                                                                            gcCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCAt                                                                        >  2:923024/1‑150 (MQ=255)
                                                                            gcCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCACGGCCATGTGGCGTGGCTGGGGGTTTGGGTTTGGCCTGTATGGCGCCGGCAGCTGGTGGATCTACGTCAGCAt                                                                        >  1:986636/1‑150 (MQ=255)
                                                                             ccttccGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATg                                                                       <  2:846445/145‑1 (MQ=255)
                                                                               gTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCATCTGGTGGATCTACGTCAGCATGaa                                                                     >  2:517485/1‑150 (MQ=255)
                                                                                  cGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAacac                                                                  <  1:809009/150‑1 (MQ=255)
                                                                                    aCATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTTGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCCGTATGGCGCCGGCACCTGGTGGATCTACGTCCGCATGAACACCt                                                                >  2:330755/1‑150 (MQ=255)
                                                                                         tGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGGCGCGGGCTGAGCTCGCGCAGGCCaa                                                                                                                                          <  1:2192741/71‑2 (MQ=17)
                                                                                         tGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGGCGCGGGCTGAGCTCGCGCAGGCCaa                                                                                                                                          >  2:2192741/1‑70 (MQ=17)
                                                                                          ggCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTAcggcg                                                          >  2:1472640/1‑150 (MQ=255)
                                                                                           gCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAg                                                                                                                                               <  2:1541861/64‑1 (MQ=255)
                                                                                           gCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAg                                                                                                                                               >  1:1541861/1‑64 (MQ=255)
                                                                                            ccGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTAc                                                                                <  1:70898/126‑1 (MQ=255)
                                                                                            ccGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTAc                                                                                >  2:70898/1‑126 (MQ=255)
                                                                                                   cGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGGCGCGGGCTGAGCTCgcgca                                                                                                                                                 <  1:1479340/55‑2 (MQ=17)
                                                                                                   cGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGGCGCGGGCTGAGCTCgcgca                                                                                                                                                 >  2:1479340/1‑54 (MQ=17)
                                                                                                    ggTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATgtggcgt                                                                                                                                   <  2:1093798/67‑1 (MQ=255)
                                                                                                    ggTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATgtggcgt                                                                                                                                   >  1:1093798/1‑67 (MQ=255)
                                                                                                     gtgtTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATc                                                                                   >  2:904096/1‑114 (MQ=255)
                                                                                                        ttgtCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCtggt                                                                                        <  1:2060561/106‑1 (MQ=255)
                                                                                                          gtCCATCGCGGTGCTCTACCTTGGCCTGCGCAAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCgctgc                                           >  1:617694/1‑149 (MQ=255)
                                                                                                          gtCCATCGCGGTGCTCTACCTTGGCCTGCGCAAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCgctgc                                           <  2:617694/149‑1 (MQ=255)
                                                                                                           tCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGctgctg                                         >  2:118908/1‑150 (MQ=255)
                                                                                                            ccATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTgg                                        <  2:231429/150‑1 (MQ=255)
                                                                                                                 gcgGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCaa                                     >  2:1121998/1‑148 (MQ=255)
                                                                                                                 gcgGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCaa                                     <  1:1121998/148‑1 (MQ=255)
                                                                                                                  cgGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCAtgtg                                                                                                                                       >  2:203248/1‑49 (MQ=255)
                                                                                                                  cgGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCAtgtg                                                                                                                                       <  1:203248/49‑1 (MQ=255)
                                                                                                                   ggTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCgt                                 <  2:1249495/150‑1 (MQ=255)
                                                                                                                          tACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGTTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGtt                              <  2:1770564/146‑1 (MQ=255)
                                                                                                                          tACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGTTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGtt                              >  1:1770564/1‑146 (MQ=255)
                                                                                                                            ccTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTAc                                                                                <  2:1634333/94‑1 (MQ=255)
                                                                                                                            ccTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTAc                                                                                >  1:1634333/1‑94 (MQ=255)
                                                                                                                             cTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGctgctg                       <  1:940572/150‑1 (MQ=255)
                                                                                                                             cTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGctgctg                       <  1:372008/150‑1 (MQ=255)
                                                                                                                             cTTGGCCTGCGCGAGCTCAGCCCGCGCCAGACCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGctgctg                                         >  1:1719996/1‑132 (MQ=255)
                                                                                                                                ggCCTGGCGCGGGCTGAGCTCGCGCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGCTGCTGGCg                    >  1:439414/1‑150 (MQ=255)
                                                                                                                                  cctggcgcGGGCTGAGCTCGCGCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACggcggc                                                        >  2:1847184/5‑112 (MQ=38)
                                                                                                                                  ccTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTTCTGCTGGCGtt                  >  1:223967/1‑150 (MQ=255)
                                                                                                                                   cTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGCTGCTGGCGttc                 >  2:1410/1‑150 (MQ=255)
                                                                                                                                    tggcgcGGGCTGAGCTCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTAc                                                                                <  2:842291/85‑1 (MQ=255)
                                                                                                                                    tggcgcGGGCTGAGCTCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTAc                                                                                >  1:842291/3‑87 (MQ=255)
                                                                                                                                    tGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGCTGCTGGCGttct                >  1:111715/1‑150 (MQ=255)
                                                                                                                                       cgcgAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGCTGCTGGCGttcttc              <  2:220508/150‑1 (MQ=255)
                                                                                                                                        gcgAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGAGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGCTGCTGGCGTTCTTcg             <  2:1512651/150‑1 (MQ=255)
                                                                                                                                          gAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGCTGCTGGCGTTCTTcgcc           <  1:1410/150‑1 (MQ=255)
                                                                                                                                             cTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGcc                                                     >  2:329866/1‑105 (MQ=255)
                                                                                                                                             cTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGcc                                                     <  1:329866/105‑1 (MQ=255)
                                                                                                                                             cTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGCTGCTGGCGTTCTTCGCCGCa        >  2:469117/1‑150 (MQ=255)
                                                                                                                                              tCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGCTGCTGGCGTTCTTCGCCGCAc       <  1:1472640/150‑1 (MQ=255)
                                                                                                                                                aGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGTAATCGTGTTGATGCTGGCGTTCTCCGCGGAACtt     >  2:1081920/1‑149 (MQ=255)
                                                                                                                                                   ccGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGACCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTtgctg                          >  1:1765416/1‑126 (MQ=255)
                                                                                                                                                   ccGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGACCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTtgctg                          <  2:1765416/126‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                     
GTTGGATCACCCGCCCCGGCTGGCCCGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGCTGCTGGCGTTCTTCGCCGCACTGGCC  >  NC_002947/5451522‑5451817

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: