Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	5,592,489	C→G	6.5%	Y128* (TAC→TAG)	PP_4920 →	lipoprotein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	5,592,489	0	C	G	6.5%	290.0 / 10.5	92	Y128* (TAC→TAG)	PP_4920	lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (43/43);  new base G (3/3);  total (46/46)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.88e-01

AAGACAATCAGCATGGCACCGCACCAGCCACCCTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGTGCCCGGCCAGGAAGACACCTTCTGGAAAACCGTCGAAGAATCGCACCGTGCCT  >  NC_002947/5592341‑5592637                                                                                                                                                     |                                                                                                                                                     aaGACAATCAGCATGGCACCGCACCAGCCACCCTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTAcc                                                                                                                                                     >  1:1313974/1‑150 (MQ=255)   gACAATCAGCATGGCACCGCACCAGCCACCCTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTg                                                                                                                                                   <  2:149367/150‑1 (MQ=255)      aaTCAGCATGGCACCGCACCAGCCACCCTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGAc                                                                                                                                                >  2:1985535/1‑150 (MQ=255)      aaTCAGCATGGCACCGCACCAGCCACCCTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGAc                                                                                                                                                >  1:1375761/1‑150 (MQ=255)      aaTCAGCATGGCACCGCACCAGCCACCCTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGAc                                                                                                                                                >  1:211683/1‑150 (MQ=255)          aGCATGGCACCGCACCAGCCACCCTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGGTAGCTGGACaact                                                                                                                                            <  1:232667/150‑4 (MQ=255)               ggCACCGCACCAGCCACCCTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGgc                                                                                                                                       >  2:1005641/1‑150 (MQ=255)                gcaccgcaccAGCCACCCTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGgcg                                                                                                                                      >  1:157159/1‑150 (MQ=255)                 caccgcaccAGCCACCCTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGCTGTCCAGGTAGCTGGACaactcga                                                                                                                                         >  2:324719/1‑140 (MQ=255)                 caccgcaccAGCCACCCTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGCTGTCCAGGTAGCTGGACaactcga                                                                                                                                         <  1:324719/146‑7 (MQ=255)                  accgcaccAGCCACCCTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGcc                                                                                                                                    >  1:143624/1‑150 (MQ=255)                  accgcaccAGCCACCCTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGcc                                                                                                                                    >  1:1124904/1‑150 (MQ=255)                    cgcaccAGCCACCCTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCa                                                                                                                                  <  1:958659/150‑1 (MQ=255)                      caccAGCCACCCTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACg                                                                                                                                >  2:1410810/1‑150 (MQ=255)                       accAGCCACCCTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACgg                                                                                                                               <  1:1410810/150‑1 (MQ=255)                        ccAGCCACCCTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGc                                                                                                                              >  1:1707578/1‑150 (MQ=255)                         cAGCCACCCTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCa                                                                                                                             >  1:572291/1‑150 (MQ=255)                         cAGCCACCCTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCa                                                                                                                             >  1:605978/1‑150 (MQ=255)                          aGCCACCCTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCAt                                                                                                                            <  2:211683/150‑1 (MQ=255)                             cACCCTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATAATCGAATTGTCCAGCTACCTGATCAGCGTTGGCGCCCACGGCATGcc                                                                                                                         >  2:1776480/1‑150 (MQ=255)                              aCCCTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGccc                                                                                                                        <  2:570188/150‑1 (MQ=255)                                ccTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGAAAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCgg                                                                                                                      <  1:1776480/150‑1 (MQ=255)                                      ggCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCgg                                                                                                                <  2:1025330/150‑1 (MQ=255)                                        ccTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCt                                                                                                              <  1:431897/150‑1 (MQ=255)                                         cTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCGGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCtt                                                                                                             >  1:578572/1‑150 (MQ=255)                                          tACGAACAGCAATACCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTtc                                                                                                            <  2:430749/150‑1 (MQ=255)                                              aaCAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTtcatca                                                                                                        >  1:1876981/1‑150 (MQ=255)                                              aaCAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAACCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTtcatca                                                                                                        >  2:1560475/1‑150 (MQ=255)                                               aCAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCaa                                                                                                       >  2:912729/1‑150 (MQ=255)                                                 aGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACt                                                                                                     >  1:654710/1‑150 (MQ=255)                                                 aGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACt                                                                                                     >  1:182392/1‑150 (MQ=255)                                                   cAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTAt                                                                                                   >  1:1460077/1‑150 (MQ=255)                                                     atatCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGTCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTc                                                                                                 <  2:286392/150‑1 (MQ=255)                                                      tatCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCa                                                                                                <  2:605978/150‑1 (MQ=255)                                                             ccAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAAc                                                                                         <  1:1560475/150‑1 (MQ=255)                                                              cAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTg                                                                                                                                         <  2:1412479/101‑1 (MQ=255)                                                              cAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTg                                                                                                                                         >  1:1412479/1‑101 (MQ=255)                                                                gTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTgg                                                                                      <  1:912729/150‑1 (MQ=255)                                                                 tGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGa                                                                                     >  1:1361136/1‑150 (MQ=255)                                                                 tGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGAGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGa                                                                                     <  2:654710/150‑1 (MQ=255)                                                                       cAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGt                                                                               >  2:1434153/1‑150 (MQ=255)                                                                        aaaCGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTg                                                                              >  2:1642495/1‑150 (MQ=255)                                                                        aaaCGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTg                                                                              >  1:628182/1‑150 (MQ=255)                                                                            gTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGa                                                                          <  1:1005641/150‑1 (MQ=255)                                                                              aaCAGCGGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGAcc                                                                        <  2:578572/150‑1 (MQ=255)                                                                               aCAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGAccc                                                                       <  2:1460077/150‑1 (MQ=255)                                                                                   cagcTACTTGCAAGCCAAGGTACGCGAGCAGGATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCa                                                                   >  2:1437784/1‑150 (MQ=255)                                                                                   cagcTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTCACCCTGCa                                                                   <  2:182392/150‑1 (MQ=255)                                                                                    agcTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAg                                                                  <  1:1434153/150‑1 (MQ=255)                                                                                       tACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGAc                                                               <  1:1437784/150‑1 (MQ=255)                                                                                          ttGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCa                                                                   >  1:876361/1‑143 (MQ=255)                                                                                          ttGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCa                                                                   <  2:876361/143‑1 (MQ=255)                                                                                           tGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGAccc                                                                       >  1:2113480/1‑138 (MQ=255)                                                                                           tGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGAccc                                                                       <  2:2113480/138‑1 (MQ=255)                                                                                           tGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGc                                                           <  2:157159/150‑1 (MQ=255)                                                                                           tGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGc                                                           <  2:628182/150‑1 (MQ=255)                                                                                            gCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCt                                                          >  1:266587/1‑150 (MQ=255)                                                                                              aaGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTgg                                                        >  1:279107/1‑150 (MQ=255)                                                                                               aGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGt                                                       >  1:1438600/1‑150 (MQ=255)                                                                                                gCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAg                                                                                 >  2:787284/1‑123 (MQ=255)                                                                                                gCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAg                                                                                 <  1:787284/123‑1 (MQ=255)                                                                                                 ccAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGCCAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCACCTATTCACGCAAACTGGCCCAGGTGCTGACCCTGCAGGCCATGCGGgcgc                                                     >  2:1050657/1‑150 (MQ=255)                                                                                                  cAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCggg                                                                                                                     >  2:1370384/1‑85 (MQ=255)                                                                                                  cAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCggg                                                                                                                     <  1:1370384/85‑1 (MQ=255)                                                                                                  cAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGTGcc                                                    >  2:472916/1‑150 (MQ=255)                                                                                                   aaGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGa                                                                          >  2:829085/1‑127 (MQ=255)                                                                                                   aaGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGa                                                                          <  1:829085/127‑1 (MQ=255)                                                                                                          gcgAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGTGCCCGGCCAgg                                            <  1:1620435/150‑1 (MQ=255)                                                                                                              gcggcaGGACGGACTGGTGATCATCGAGTTGTCCAGCGACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACGGGACAAGGTGCTGACCCTGCAGGACATGCTGGTGCCCGGCCAGGAAGa                                        <  1:1050657/147‑1 (MQ=255)                                                                                                              gcagcaTGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGTGCCCGGCCAGGAAGa                                        <  2:1707578/150‑1 (MQ=255)                                                                                                                  caTGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGTTCCCGGCCAGGAAGACAcc                                    <  2:1375761/150‑1 (MQ=255)                                                                                                                      aCGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGTGCCCGGCCa                                              <  1:494675/136‑1 (MQ=255)                                                                                                                      aCGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGTGCCCGGCCa                                              >  2:494675/1‑136 (MQ=255)                                                                                                                       cGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGTGCCCGGCCAGGAAGACACCTTCTg                               <  2:1321446/150‑1 (MQ=255)                                                                                                                       cGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAAATATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGTGCCCGGCCAGGAAGACACCTTCTg                               <  1:1985535/150‑1 (MQ=255)                                                                                                                              gTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTg                                                                              >  2:977500/1‑96 (MQ=255)                                                                                                                              gTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTg                                                                              <  1:977500/96‑1 (MQ=255)                                                                                                                                gATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGTGCCCGGCCAGGAAGACACCTTCTGGAAAACCGt                      <  1:1642495/150‑1 (MQ=255)                                                                                                                                 atcttcGAGTTGTCCATCTACCTGGATAGCGGGGGCGCCCACGTCATGACCGGGCGCGCGTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCTGGACTTGCGGGGCCCGGGGGAGGAAAACACCCTCTGGAAAACCGTc                     <  2:1098123/150‑1 (MQ=255)                                                                                                                                   cgtcGAGTTCTCCAGCTACCTGGACAGCTGTGGCTCCTGGGGCATGCCCGGGCGCGGCTTCATCGACTATTCACGCAAACTGGACGAGGTGCTGACCCTGCAGGACATGCTGTTGCCCGGCCAGGAAGACACCTCCTGGAAAACCTTCga                   >  2:363312/3‑150 (MQ=255)                                                                                                                                    atcGAGTTGTCCAGCTACCTTGACAGTGGTGAACCTGGCTGCCTGCCCGGGCGCGCCTGCATCAACTACTCGCGCAAGCCGGACAAGGTGCTGACCCTCCAGGACAAGCTGGTGCCGGGCCAGGAAAACACCTTCTGGAGAGCCGTCgaa                  <  2:777273/150‑1 (MQ=255)                                                                                                                                     tcGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGTGCCCGGc                                                <  2:679648/119‑1 (MQ=255)                                                                                                                                     tcGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGTGCCCGGc                                                >  1:679648/1‑119 (MQ=255)                                                                                                                                     tcGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGTGCCCGGCCAGGAAGACACCTTCTGGAAAACCGTc                     <  1:297749/146‑1 (MQ=255)                                                                                                                                     tcGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGTGCCCGGCCAGGAAGACACCTTCTGGAAAACCGTc                     >  2:297749/1‑146 (MQ=255)                                                                                                                                       ccgctGTCCAGGTAGCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGTGCCCGGCCAGGAAGACACCTTCTGGAAAACCGTCgaagaa               >  1:1329760/5‑150 (MQ=255)                                                                                                                                        cgctGTCCAGGTAGCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGAcc                                                                        <  2:1463118/89‑1 (MQ=255)                                                                                                                                        cgctGTCCAGGTAGCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGAcc                                                                        >  1:1463118/4‑92 (MQ=255)                                                                                                                                         gTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGTGCCCGGCCAGGAAGACACCTTCTGGAAAACCGTCGAAGAATc             <  2:1313974/150‑1 (MQ=255)                                                                                                                                          ttGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGTGCCCGGCCAGGAAGACACCTTCTGGAAAACCGTCGAAGAATCg            <  2:572291/150‑1 (MQ=255)                                                                                                                                            gTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGTGCCCGGCCAGGAAGACACCTTTTGGAAAACCGTCGAAGAATCGCa          >  1:1944470/1‑150 (MQ=255)                                                                                                                                               cAGCTACCTGGACAGCGGTGGCGCCCACGTCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGTGCCCGGCCAGGAAGACACCTTCTGGAAAACCGTCGAAGAATCGCACCg       >  1:1592853/1‑150 (MQ=255)                                                                                                                                                aGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGAGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGTGCCCGGCCAGGAAGACACCTTCTGGAAAACCGTCGAAGAATCGCACCGt      >  1:1353955/1‑150 (MQ=255)                                                                                                                                                     ccTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGTGCCCGGCCAGGAAGACACCTTCTGGAAAACCGTCGAAGAATCGCACCGTGCCt  <  1:1497686/149‑1 (MQ=255)                                                                                                                                                     ccTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGTGCCCGGCCAGGAAGACACCTTCTGGAAAACCGTCGAAGAATCGCACCGTGCCt  >  2:1497686/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     AAGACAATCAGCATGGCACCGCACCAGCCACCCTGCAGGCCTACGAACAGCAATATCTGGCCAGTGCCGACAAACGTAACAGCAGCTACTTGCAAGCCAAGGTACGCGAGCAGCATGACGGACTGGTGATCATCGAGTTGTCCAGCTACCTGGACAGCGGTGGCGCCCACGGCATGCCCGGGCGCGGCTTCATCAACTATTCACGCAAACTGGACAAGGTGCTGACCCTGCAGGACATGCTGGTGCCCGGCCAGGAAGACACCTTCTGGAAAACCGTCGAAGAATCGCACCGTGCCT  >  NC_002947/5592341‑5592637

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑