| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,746,541 | G→C | 10.0% | intergenic (+32/+67) | PP_5042 → / ← PP_5043 | hypothetical protein/PhoPQ‑activated pathogenicity‑like protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,746,541 | 0 | G | C | 10.0% | 290.7 / 18.5 | 98 | intergenic (+32/+67) | PP_5042/PP_5043 | hypothetical protein/PhoPQ‑activated pathogenicity‑like protein |
| Reads supporting (aligned to +/- strand): ref base G (44/43); new base C (5/5); total (50/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 103 total aligned reads displayed.
TAAAAGCCGGCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCAAAACGCT > NC_002947/5746395‑5746685 | tAAAAGCCGGCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCgcgg > 1:875861/1‑150 (MQ=255) gCCGGCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGggcggc < 1:1043856/150‑1 (MQ=255) cGGCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGgcg‑c < 1:804173/150‑1 (MQ=255) cTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCCAGGGTGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGGGCCGTGCGGCCGGCG‑CCCg > 2:1021554/1‑150 (MQ=255) tgtgCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGa > 2:680542/1‑150 (MQ=255) cACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCCCGCGCGGCG‑CTCGa < 2:152987/146‑1 (MQ=255) cACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCCCGCGCGGCG‑CTCGa > 1:152987/1‑146 (MQ=255) ccATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGAGGGCGGCG‑CTCGATTCtgt > 1:539501/1‑150 (MQ=255) cATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCtgtg > 1:863712/1‑150 (MQ=255) aTTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTgg < 2:1573695/150‑1 (MQ=255) tttATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGc > 2:1175870/1‑150 (MQ=255) aCAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGcc > 2:1571968/1‑150 (MQ=255) cAAGCCCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCg < 1:980647/150‑1 (MQ=255) gcgcCCGGATACCTGCCGCAACCACCACAAGGTCGGGCCACGGCCGGGGCATTGCGCCTACAAGCCCAAAGTGGTTGGGCGTTGAGTCTTGCGCCGGCGCCTAAATCTAGCGCAGCGCGGGAGGCG‑CTCGCTTCTGTGAAGAGGCAGAGc > 2:722664/1‑150 (MQ=255) acacGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCTCCGGGGCATAAATCGAGCGACGCTCGGGAGGCG‑CTCGCTTCGATGGCGATGCCGAGCTg > 2:269328/4‑150 (MQ=255) cccGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTgg < 1:680542/150‑1 (MQ=255) cccGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTgg < 2:875861/150‑1 (MQ=255) ggATACCAGACGCAACCCCCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGACATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCa < 2:1086247/150‑1 (MQ=255) cTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGTTGCCGAGCTGGGCATGAAGc > 2:371249/1‑150 (MQ=255) cTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGc > 1:1825425/1‑150 (MQ=255) gCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCAc < 1:1021554/150‑1 (MQ=255) ccGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CGCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACt < 1:1893495/150‑1 (MQ=255) gCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGa > 1:194443/1‑150 (MQ=255) cacccaccCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGaa < 2:2149310/147‑1 (MQ=255) ccaccCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGGGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAAccc > 2:1991181/1‑150 (MQ=255) caccCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCa > 2:1634742/1‑150 (MQ=255) ccccAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGgcg‑c < 1:1563670/103‑1 (MQ=255) ccccAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCAcc > 1:540147/1‑150 (MQ=255) ggTCGGGCCACGGCCGGGGTATTGCGCTTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTccc < 2:1304972/150‑1 (MQ=255) gTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCa > 2:806383/1‑150 (MQ=255) gggCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCAttt > 1:69093/1‑150 (MQ=255) gCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTca > 2:618059/1‑150 (MQ=255) gCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTca > 1:1821044/1‑150 (MQ=255) ccACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTc < 2:1603104/141‑1 (MQ=255) ccACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTc > 1:1603104/1‑141 (MQ=255) cACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTcagc < 2:194443/150‑1 (MQ=255) cACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTcagc < 2:304164/150‑1 (MQ=255) aCGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCa < 2:113421/124‑1 (MQ=255) aCGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCa > 1:113421/1‑124 (MQ=255) aCGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTcagcc > 1:356944/1‑150 (MQ=255) gCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTcagccagc < 1:618059/150‑1 (MQ=255) ccGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGa > 1:873689/1‑116 (MQ=255) ccGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGa < 2:873689/116‑1 (MQ=255) cGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATTAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCgg > 1:1655141/1‑150 (MQ=255) cGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCgg < 1:1175870/150‑1 (MQ=255) ggggTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGAt > 1:1463730/1‑98 (MQ=255) ggggTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGAt < 2:1463730/98‑1 (MQ=255) ggTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTcagccagc > 2:493424/1‑145 (MQ=255) ggTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTcagccagc < 1:493424/145‑1 (MQ=255) gaTTGCGCCTACAAGACCCAGGTGGTTGGGCGGTGTGACTTGCGCCGGGGCATAACTAGAGCGGC‑CGTTGGTACAGACTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAg < 1:1571968/149‑1 (MQ=255) gcgcCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCCTGAGGCGTGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTCAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTcc < 1:1894680/150‑1 (MQ=255) gcgcCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTcc < 1:192297/150‑1 (MQ=255) cgcCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTg > 2:1425126/1‑98 (MQ=255) cgcCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTg < 1:1425126/98‑1 (MQ=255) gcCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCgg > 2:495765/1‑150 (MQ=255) cTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCa > 1:1439592/1‑150 (MQ=255) cTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCa > 1:1641043/1‑150 (MQ=255) tACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCaa < 2:1821044/150‑1 (MQ=255) tACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCaa < 1:343595/150‑1 (MQ=255) aaGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCa < 2:1173456/150‑1 (MQ=255) gCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCgcgggcg > 2:1979982/1‑60 (MQ=255) gCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCgcgggcg < 1:1979982/60‑1 (MQ=255) ccAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTAAGCCAGCGGGGAAGCTCCGGCAAGCAcccc > 1:1528362/1‑150 (MQ=255) aaGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGGGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCAcccccc < 1:722664/150‑1 (MQ=255) gggggtTGGGCGTTTAGTCTTGCGCCGGTGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTg < 2:923638/147‑1 (MQ=255) gggtTGGGCGTGGAGTCTTGCGCCGGGGCATAAATCGAGCGCGGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGAt < 1:1556912/149‑1 (MQ=255) gtTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGa < 2:584342/86‑1 (MQ=255) gtTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGa > 1:584342/1‑86 (MQ=255) ttGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCg > 1:1131245/1‑150 (MQ=255) gggCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGAtt < 2:1341121/57‑1 (MQ=255) gggCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGAtt > 1:1341121/1‑57 (MQ=255) gCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtgg > 2:1798366/1‑150 (MQ=255) gTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCAcccccc < 1:1038402/137‑1 (MQ=255) gTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCAcccccc > 2:1038402/1‑137 (MQ=255) ttGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGCTGCCGACCTGGGCATGAAGCACTGAACCCACGGCCCCCCTTTCAGCCAGCGGCGAACCTCCGGCACGCCCCCCCCTCATCCGCtgctgg > 2:2233039/1‑150 (MQ=255) gAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGAt > 2:920569/1‑150 (MQ=255) gAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGAt < 2:37056/150‑1 (MQ=255) aGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTg > 1:1221408/1‑68 (MQ=255) aGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTg < 2:1221408/68‑1 (MQ=255) ttGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCa < 1:806383/150‑1 (MQ=255) tGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAg < 2:540147/150‑1 (MQ=255) gggggCATAAGGCGAGCGCCGCGCGGGCGGCG‑CTCGCTTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCGCCCCCCTGATCCGCTGGTGGATGCTCAGGATaa < 2:1742201/149‑1 (MQ=255) cGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATaa > 1:1169959/1‑150 (MQ=255) cGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATaa > 1:12556/1‑150 (MQ=255) ggCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTc > 1:71103/1‑150 (MQ=255) cacagaaTCGAGCGCCGCCCGCGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtggt < 2:1181077/126‑1 (MQ=255) cacagaaTCGAGCGCCGCCCGCGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtggt > 1:1181077/6‑131 (MQ=255) cATAAAGCGAGCGACGCCCGCGCGCCG‑CAACATCCTGCGGCGATCCCGAGCTCGGCACGAAGCACTCAACCAACCGCTCCCATTTCAGCCAGCGGGGAAGCTACGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTg < 2:714400/150‑1 (MQ=255) acagaaTCGAGCGCCGCCCGCGCGGCG‑CTCGATTTTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCA‑CCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGc < 1:1764983/146‑1 (MQ=255) acagaaTCGAGCGCCGCCCGCGCGGCG‑CTCGATTTTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCA‑CCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGc > 2:1764983/5‑150 (MQ=255) aTAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGc < 1:920569/150‑1 (MQ=255) tAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCg > 1:183474/1‑150 (MQ=255) tCGAGCGCCGCCCGCGCGGCG‑CTCGATTTTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCaa > 2:1466955/1‑150 (MQ=255) gAGCGCCGCCCGCGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGaa < 1:1611960/91‑1 (MQ=255) gAGCGCCGCCCGCGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGaa > 2:1611960/1‑91 (MQ=255) gccgcGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTccc > 1:656204/1‑69 (MQ=255) gccgcGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTccc < 2:656204/69‑1 (MQ=255) gccgcGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCAAAACGCt < 2:12556/150‑1 (MQ=255) gcgggcggCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCg > 1:626764/1‑88 (MQ=255) gcgggcggCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCg < 2:626764/88‑1 (MQ=255) | TAAAAGCCGGCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCG‑CTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCAAAACGCT > NC_002947/5746395‑5746685 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |