| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 550,552 | C→G | 7.3% | intergenic (+30/‑112) | tufB → / → rpsJ | elongation factor Tu‑B/30S ribosomal protein S10 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 550,552 | 0 | C | G | 7.3% | 248.4 / 10.9 | 82 | intergenic (+30/‑112) | tufB/rpsJ | elongation factor Tu‑B/30S ribosomal protein S10 |
| Reads supporting (aligned to +/- strand): ref base C (37/39); new base G (3/3); total (40/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.28e-01 | |||||||||||
AACATTCAGATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAGGCTTT > NC_002947/550403‑550701 | aacaTTCAGATGACTGTTACCCTGATCAAGACCAACGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTc > 1:1148326/1‑150 (MQ=255) caTTCAGATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGATTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAg > 2:572117/1‑150 (MQ=255) aTTCAGATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGc > 1:377645/1‑150 (MQ=255) tCAGATGACTGTTACCCTGCAAACGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCgg < 2:540448/150‑1 (MQ=255) cAGATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTGAGCggg < 1:963826/150‑1 (MQ=255) aGATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTGAGCgggg < 1:1393732/150‑1 (MQ=255) aTGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑t > 2:115324/1‑150 (MQ=255) aTGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑t < 2:444370/150‑1 (MQ=255) gACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑ttt < 1:1900934/150‑1 (MQ=255) gTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑ttttttt < 1:867753/150‑1 (MQ=255) ttACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑tttttttt > 2:1847982/1‑150 (MQ=255) aCCCTGATCAAGACCATCGCAATGGAAGCCGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑ATTTTTTTAt > 2:748847/1‑150 (MQ=255) cccTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTAtt > 2:1097744/1‑150 (MQ=255) ccTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTg > 1:1361098/1‑150 (MQ=255) tGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTCATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTggg < 2:140400/150‑1 (MQ=255) gATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGt < 2:2091224/150‑1 (MQ=255) aaGACCCTCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGGTTTTTTTTTATTGGGTTGa < 2:59433/150‑1 (MQ=255) aaGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGac > 1:772376/1‑150 (MQ=255) gACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGacac > 2:394829/1‑150 (MQ=255) tCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAAtt > 1:265439/1‑150 (MQ=255) cGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTg < 1:1835633/150‑1 (MQ=255) aaTGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCgggg > 1:369234/1‑119 (MQ=255) aaTGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCgggg < 2:369234/119‑1 (MQ=255) aaTGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCggg > 1:1305913/1‑118 (MQ=255) aaTGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCggg < 2:1305913/118‑1 (MQ=255) aaTGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTgggg < 1:352603/150‑1 (MQ=255) tGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGc < 1:1982855/150‑1 (MQ=255) gAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGt > 1:936997/1‑150 (MQ=255) aaGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTc < 1:882491/150‑1 (MQ=255) gACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCta < 1:394829/150‑1 (MQ=255) aCGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCtat < 2:1325783/150‑1 (MQ=255) aCGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCtat < 1:621580/150‑1 (MQ=255) aCGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCtat < 1:804298/150‑1 (MQ=255) gcTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACg > 2:316455/1‑150 (MQ=255) cTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGc < 2:1148326/150‑1 (MQ=255) ttCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGcc > 1:1706624/1‑150 (MQ=255) ttCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGcc < 1:2255829/150‑1 (MQ=255) aTCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCttt > 1:974897/1‑150 (MQ=255) tGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTggg > 1:50365/1‑119 (MQ=255) tGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTggg < 2:50365/119‑1 (MQ=255) gAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCgg > 2:396518/1‑150 (MQ=255) aaGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCggg < 1:1097744/150‑1 (MQ=255) ggTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAg < 1:106648/150‑1 (MQ=255) cGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGc < 2:974897/150‑1 (MQ=255) gTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGaa > 1:1165036/1‑121 (MQ=255) gTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGaa < 2:1165036/121‑1 (MQ=255) tACCGTCGGCGCCGGAGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑ATTTTTTTATTGGGTTGACACTAATTGGGGGCGTATATAGAATCACGCCTCCTTTTAGCGGGCGTGA‑TGCGt > 2:394137/1‑150 (MQ=255) gTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGt < 1:572117/150‑1 (MQ=255) gcCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGTGGGCGTAG‑TGCGTCCGTTGGGaa < 1:316455/150‑1 (MQ=255) cGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTTTAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTg > 2:1119823/1‑144 (MQ=255) cGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTg < 1:1119823/144‑1 (MQ=255) gtgGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGa < 2:772376/150‑1 (MQ=255) gtgACCAAAACCATCGAGTCTTCACTCAAGGGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGa < 2:1667866/150‑1 (MQ=255) tgGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAg > 1:948158/1‑150 (MQ=255) gCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTc > 2:1759252/1‑150 (MQ=255) ccAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTCt < 1:115324/150‑1 (MQ=255) cAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTCTg > 1:2326637/1‑150 (MQ=255) catcGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATcc > 2:212718/1‑150 (MQ=255) tcGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTg > 1:14647/1‑135 (MQ=255) tcGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTg < 2:14647/135‑1 (MQ=255) tcGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCaa > 1:879745/1‑150 (MQ=255) tcGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCaa > 2:2115007/1‑150 (MQ=255) tcGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGAGTCTATAGACTCACGCCTCCTTTTAGCGTGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCaa < 2:265439/150‑1 (MQ=255) tAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCaa < 2:1361098/150‑1 (MQ=255) aTCACTCGATCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCaaaa > 2:405036/1‑150 (MQ=255) aTCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAAt < 1:1879685/144‑1 (MQ=255) aTCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAAt > 2:1879685/1‑144 (MQ=255) aTCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCaaaa > 2:2292078/1‑150 (MQ=255) aCTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCt < 1:1395004/72‑1 (MQ=255) aCTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCt > 2:1395004/1‑72 (MQ=255) gATTGAAAAACGCCACGGCCCGCGGCGG‑ATTTCTTCACTGGCTGGACACTGAGTGGGGGCGTCTATATAATCACGCTTCCTTTTAGCGGGAGTAG‑TGCGTCCGCTGCGAACAGCCTGGAGTCTGAAATCCACTGCAAAATCAGGAAATcc > 2:1780051/1‑150 (MQ=255) gATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATcc > 2:1087488/1‑150 (MQ=255) gATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATcc < 1:2115007/150‑1 (MQ=255) aataaaaaaaaCCCCCGCTGAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATcc > 2:1942905/6‑150 (MQ=255) aaaaCCCCCGCTGAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTACAGATCGGAG‑TGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAg > 1:145060/1‑150 (MQ=255) aaaaCCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTCTGAAGGGGAAGGCAAAATCAGCAAATCCGTATCAg > 2:2046043/1‑150 (MQ=255) aaaaCCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAg > 2:2029790/1‑150 (MQ=255) aaaCCCCCGCTCGGCGGGGG‑TCTTATTAATTGGGTGGACACTAAGTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTAGCAgg < 2:879745/150‑1 (MQ=255) aCCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGtt < 2:1706624/150‑1 (MQ=255) ccccGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAATCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGa > 2:1644193/1‑150 (MQ=255) ccGCTGAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTc > 1:755013/1‑108 (MQ=255) ccGCTGAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTc < 2:755013/108‑1 (MQ=255) ccGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAg < 1:2029790/150‑1 (MQ=255) cAGCGGGGG‑TTTTTTTTATTGGGTTGCCCCTAATTGGGGGCGTCTATAGAATCACGCCTCC‑TTAAGCCCCAGGAGTTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAGGCttt < 1:405036/150‑1 (MQ=255) cAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAGGCttt < 2:948158/150‑1 (MQ=255) | AACATTCAGATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAG‑TGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAGGCTTT > NC_002947/550403‑550701 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |