Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_002947 6,098,326 (CAAGCTGCG)2→1 coding (811‑819/867 nt) PP_5350 ← RpiR family transcriptional regulator

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947 6098315 6098323 9 375 [0] [0] 378 PP_5350 RpiR family transcriptional regulator

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 6098324 =0 (0.000)335 (1.230) 137/270 0.2 100% coding (821/867 nt) PP_5350 RpiR family transcriptional regulator
?NC_002947 = 6098314 0 (0.000)coding (831/867 nt) PP_5350 RpiR family transcriptional regulator

Only 100 of 375 total aligned reads displayed.

TACCGGCCTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGACGCAAGCTGCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCGGTGTCTTCATG  >  NC_002947/6098165‑6098463
                                                                                                                                                     |                                                                                                                                                     
tACCGGCCTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCGGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGa                                                                                                                                                       >  1:2944034/1‑150 (MQ=255)
   cGGCCTCTTCGTGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgc                                                                                                                                                    <  2:4099198‑M2/150‑4 (MQ=255)
    ggCCTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgc                                                                                                                                                    <  2:2798922‑M2/149‑4 (MQ=255)
     gCCTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaa                                                                                                                                                  <  1:511071‑M2/150‑6 (MQ=255)
     gCCTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaa                                                                                                                                                  <  1:3779703‑M2/150‑6 (MQ=255)
        tctTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagct                                                                                                                                               <  2:2697272‑M2/150‑9 (MQ=255)
          ttCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgc                                                                                                                                             <  2:6509787‑M2/150‑11 (MQ=255)
          ttCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgc                                                                                                                                             >  2:5062207‑M2/1‑140 (MQ=255)
          ttCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgc                                                                                                                                             <  2:4217146‑M2/150‑11 (MQ=255)
                  cTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGACGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacg                                                                                                                                     >  1:1278586‑M2/1‑132 (MQ=255)
                  cTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacg                                                                                                                                     >  2:1708002‑M2/1‑132 (MQ=255)
                   ttGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgc                                                                                                                                    <  1:720245‑M2/150‑20 (MQ=255)
                    tGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgct                                                                                                                                   <  1:4403489‑M2/150‑21 (MQ=255)
                      ccccGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctct                                                                                                                                 <  1:1116424‑M2/150‑23 (MQ=255)
                         cGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttca                                                                                                                              >  1:1181835‑M2/1‑125 (MQ=255)
                              acacaGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtgg                                                                                                                         <  1:1412916‑M2/150‑31 (MQ=255)
                                acaGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggtt                                                                                                                       <  1:4069491‑M2/150‑33 (MQ=255)
                                acaGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggtt                                                                                                                       <  1:3079597‑M2/150‑33 (MQ=255)
                                acaGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggtt                                                                                                                       <  1:634654‑M2/150‑33 (MQ=255)
                                acaGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggtt                                                                                                                       <  2:1394265‑M2/150‑33 (MQ=255)
                                acaGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggtt                                                                                                                       <  2:2141866‑M2/150‑33 (MQ=255)
                                acaGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgg                                                                                                                                           <  2:6126885‑M2/130‑13 (MQ=255)
                                acaGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGAGACAGAcgcaagctgcgtttcacgctcttcaggtggtt                                                                                                                       <  1:4724134‑M2/150‑33 (MQ=255)
                                  aGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttga                                                                                                                     >  1:587164‑M2/1‑116 (MQ=255)
                                  aGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttga                                                                                                                     <  1:2470358‑M2/150‑35 (MQ=255)
                                    gAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCACGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgacc                                                                                                                   >  1:4099198‑M2/1‑114 (MQ=255)
                                    gAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgacc                                                                                                                   <  1:1608838‑M2/150‑37 (MQ=255)
                                     aaTTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgacca                                                                                                                  >  2:5851312‑M2/1‑113 (MQ=255)
                                      aTTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccag                                                                                                                 >  1:3286584‑M2/1‑112 (MQ=255)
                                        tGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggc                                                                                                               >  2:6422842‑M2/1‑110 (MQ=255)
                                           aCCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctag                                                                                                            >  1:6009467‑M2/1‑107 (MQ=255)
                                             cGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggc                                                                                                          >  1:6131559‑M2/1‑105 (MQ=255)
                                             cGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggc                                                                                                          >  2:884775‑M2/1‑105 (MQ=255)
                                               aTTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggccc                                                                                                        >  2:365205‑M2/1‑103 (MQ=255)
                                                tttATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccg                                                                                                       <  2:2462204‑M2/150‑49 (MQ=255)
                                                   ataGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgc                                                                                                    >  2:4927387‑M2/1‑99 (MQ=255)
                                                     aGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggtt                                                                                                                       <  1:4906961‑M2/129‑33 (MQ=255)
                                                     aGAAGTGCACAGTACCTGGGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgc                                                                                                  >  2:1840714‑M2/1‑97 (MQ=255)
                                                       aaGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgcca                                                                                                >  1:1002026‑M2/1‑95 (MQ=255)
                                                        aGTTCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccat                                                                                               >  1:5437216‑M2/1‑94 (MQ=255)
                                                        aGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccat                                                                                               >  2:2439157‑M2/1‑94 (MQ=255)
                                                        aGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccat                                                                                               >  2:3463745‑M2/1‑94 (MQ=255)
                                                         gTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccacgcgccatg                                                                                              >  2:2353960‑M2/1‑93 (MQ=255)
                                                         gTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccacgcgccatg                                                                                              >  2:3100008‑M2/1‑93 (MQ=255)
                                                            cacaGTACCTGTGGGAGCGGGCACGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatgggc                                                                                           >  1:1776173‑M2/1‑90 (MQ=255)
                                                            cacaGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggca                                                                                           <  1:999371‑M2/150‑61 (MQ=255)
                                                               aGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacg                                                                                        >  2:1166742‑M2/1‑87 (MQ=255)
                                                                    cTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccat                                                                                   <  2:1555874‑M2/150‑69 (MQ=255)
                                                                    cTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccat                                                                                   <  1:1685882‑M2/150‑69 (MQ=255)
                                                                    cTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccat                                                                                   <  2:5194029‑M2/150‑69 (MQ=255)
                                                                    cTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccat                                                                                   >  1:5581895‑M2/1‑82 (MQ=255)
                                                                     tgtgGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatg                                                                                  <  1:4308735‑M2/150‑70 (MQ=255)
                                                                       tgGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggc                                                                                >  1:5720956‑M2/1‑79 (MQ=255)
                                                                          gAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccag                                                                             >  1:2239202‑M2/1‑76 (MQ=255)
                                                                            gCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagca                                                                           <  1:3645016‑M2/150‑77 (MQ=255)
                                                                            gCGGGCAAGCCCGCGAACAGCCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagca                                                                           >  2:1326594‑M2/1‑74 (MQ=255)
                                                                               ggCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgt                                                                        <  2:4705575‑M2/150‑80 (MQ=255)
                                                                                gCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtc                                                                       >  1:213848‑M2/1‑70 (MQ=255)
                                                                                  aaGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcga                                                                     <  2:6045203‑M2/150‑83 (MQ=255)
                                                                                      ccGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcac                                                                 <  2:777121‑M2/150‑87 (MQ=255)
                                                                                       cgcgAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaggctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcacc                                                                >  2:1529782‑M2/1‑63 (MQ=255)
                                                                                          gAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccacc                                                             >  1:6465519‑M2/1‑60 (MQ=255)
                                                                                              aGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggt                                                         >  2:2944034‑M2/1‑56 (MQ=255)
                                                                                               ggCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtg                                                        >  2:5966383‑M2/1‑55 (MQ=255)
                                                                                               ggCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtg                                                        >  1:4852304‑M2/1‑55 (MQ=255)
                                                                                               ggCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtg                                                        <  1:6411315‑M2/150‑96 (MQ=255)
                                                                                                gCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgg                                                       >  2:4860692‑M2/1‑54 (MQ=255)
                                                                                                gCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgg                                                       >  1:5640482‑M2/1‑54 (MQ=255)
                                                                                                 ccAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtggg                                                      >  2:4492987‑M2/1‑53 (MQ=255)
                                                                                                 ccAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtggg                                                      >  2:4231473‑M2/1‑53 (MQ=255)
                                                                                                     tACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaat                                                  >  1:5556360‑M2/1‑49 (MQ=255)
                                                                                                        aGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacg                                               <  1:3915357‑M2/150‑105 (MQ=255)
                                                                                                          gTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatg                                                                                              >  2:2590095‑M2/1‑44 (MQ=255)
                                                                                                           ttGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcga                                            <  1:3508986‑M2/150‑108 (MQ=255)
                                                                                                            tGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgg                                                       >  1:4565084‑M2/1‑42 (MQ=255)
                                                                                                                ttCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtca                                       >  2:4146583‑M2/1‑38 (MQ=255)
                                                                                                                  cAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagt                                     >  1:3491056‑M2/1‑36 (MQ=255)
                                                                                                                   aGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtg                                    >  1:966530‑M2/1‑35 (MQ=255)
                                                                                                                   aGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtg                                    <  1:4012324‑M2/150‑116 (MQ=255)
                                                                                                                   aGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccacgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtg                                    >  1:4216537‑M2/1‑35 (MQ=255)
                                                                                                                     tcgtcgGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggg                                  >  1:2564694‑M2/1‑33 (MQ=255)
                                                                                                                     tcgtcgGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggg                                  >  1:4171772‑M2/1‑33 (MQ=255)
                                                                                                                     tcgtcgGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggg                                  <  2:5510208‑M2/150‑118 (MQ=255)
                                                                                                                          ggTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgta                             >  2:3779703‑M2/1‑28 (MQ=255)
                                                                                                                                 ttGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcg                      >  2:3345226‑M2/1‑21 (MQ=255)
                                                                                                                                 ttGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcg                      >  1:3156783‑M2/1‑21 (MQ=255)
                                                                                                                                   gATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggt                    >  2:3863154‑M2/1‑19 (MQ=255)
                                                                                                                                   gATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggt                    >  1:5049666‑M2/1‑19 (MQ=255)
                                                                                                                                   catCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggt                    >  2:1954489‑M2/2‑19 (MQ=255)
                                                                                                                                     tCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgt                  <  2:3186315‑M2/150‑134 (MQ=255)
                                                                                                                                       gACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtct                >  1:5194029‑M2/1‑15 (MQ=255)
                                                                                                                                          ttGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtcttca             <  1:1971047‑M2/150‑139 (MQ=255)
                                                                                                                                           tGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtcttc              <  2:1226165‑M2/148‑138 (MQ=255)
                                                                                                                                            gggCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtcttcatg           <  1:2741187‑M2/150‑141 (MQ=255)
                                                                                                                                               cGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtcttcatgcac        >  1:2651466‑M2/1‑7 (MQ=255)
                                                                                                                                                 aCAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtcttcatgcacgt      >  2:6222788‑M2/1‑5 (MQ=255)
                                                                                                                                                  cAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccttggcaacgcccatgtccagcacgtcgatcaccaccaggtgggcaatacgcgaggtctgtggggtgtagatctcggtgtcttcatgcacgtc     >  2:5595806‑M2/1‑4 (MQ=255)
                                                                                                                                                  cAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtcttcatgcacgtc     <  1:790233‑M2/150‑147 (MQ=255)
                                                                                                                                                     acgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtcttcatgcacgtcgat  <  1:3726353‑M2/150‑150 (MQ=255)
                                                                                                                                                     acgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggt                    >  2:6528554‑M2/1‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
TACCGGCCTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGACGCAAGCTGCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCGGTGTCTTCATG  >  NC_002947/6098165‑6098463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑