New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 4808173 =21 (0.130)13 (0.080) 8/242 14.9 17.7% intergenic (‑282/‑273) PP_4234/dsbD‑II bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
?NC_002947 = 4945372 100 (0.640)intergenic (+732/+66) PP_5673/flhB D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4808277‑4808173
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcAAGCTCGCTCCTACATTTGTTTCGGGCCAGTCCCTCCTGTGCCCGGCGCGCGCGACCGCCTTGTTTGTACGGCGCAATATCGAGGTGTACGCGAAGGCGGTCGCGCGTAAATCCCGCAGGAAT  <  NC_002947/4945372‑4945250
                                                                                                                                                                                                                                    
GCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGT                                                                                                         <  1:5935595/125‑1
GCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGT                                                                                                         <  1:5935607/125‑1
         GAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGccag                                                                                                <  1:5935626/125‑5
         GAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGccag                                                                                                <  1:5935571/125‑5
          AATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCCAGT                                                                                              <  1:5935599/125‑1
             TTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCCAGTCCC                                                                                           <  1:5935730/125‑1
             TTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCCAGTCCC                                                                                           <  1:5935624/125‑1
                                      GAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGC                                                                  <  1:5935658/125‑1
                                          TGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTG                                                              <  1:5935647/125‑1
                                          TGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCT                                                                <  1:5935653/123‑1
                                           GTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGT                                                             <  1:5935627/125‑1
                                            TTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGTCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGTT                                                            <  1:5935615/125‑1
                                             TTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGTT                                                            <  1:5935622/124‑1
                                                                                                       GCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTCCCTCCTGTGCCCGGCGCGCGCGACCGCCTTGTTTGTACGGCGCAATATCGAGGTGTACGCGAAGGCGGTCGCGCGTAAATCCCGCAGGAAT  <  1:6116502/125‑1
                                                                                                       GCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTCCCTCCTGTGCCCGGCGCGCGCGACCGCCTTGTTTGTACGGCGCAATATCGAGGTGTACGCGAAGGCGGTCGCGCGTAAATCCCGCAGGAAT  <  1:6116583/125‑1
                                                                                                       GCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTCCCTCCTGTGCCCGGCGCGCGCGACCGCCTTGTTTGTACGGCGCAATATCGAGGTGTACGCGAAGGCGGTCGCGCGTAAATCCCGCAGGAAT  <  1:6116585/125‑1
                                                                                                       GCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTCCCTCCTGTGCCCGGCGCGCGCGACCGCCTTGTTTGTACGGCGCAATATCGAGGTGTACGCGAAGGCGGTCGCGCGTAAATCCCGCAGGAA   >  1:6116449/1‑124
                                                                                                       GCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTCCCTCCTGTGCCCGGCGCGCGCGACCGCCTTGTTTGTACGGCGCAATATCGAGGTGTACGCGAAGGCGGTCGCGCGTAAATCCCGCAGGAA   <  1:6116640/124‑1
                                                                                                                                                                                                                                    
GCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4808277‑4808173
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcAAGCTCGCTCCTACATTTGTTTCGGGCCAGTCCCTCCTGTGCCCGGCGCGCGCGACCGCCTTGTTTGTACGGCGCAATATCGAGGTGTACGCGAAGGCGGTCGCGCGTAAATCCCGCAGGAAT  <  NC_002947/4945372‑4945250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.