Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_002947	3,845,705	+G	intergenic (‑72/+26)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	3,845,703	1	.	G	98.9%	155.6 / ‑3.9	92	intergenic (‑70/+28)	PP_3394/PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base . (1/0);  new base G (53/38);  total (54/38)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑GG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCA  >  NC_002947/3845580‑3845819                                                                                                                             |                                                                                                                      cAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTcgc‑g                                                                                                                      <  1:3269037/125‑1 (MQ=255)  aGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑gg                                                                                                                     <  1:3269038/125‑1 (MQ=255)    gCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑gggc                                                                                                                   <  1:3269039/125‑3 (MQ=255)    gCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑gggc                                                                                                                   >  1:3269381/1‑123 (MQ=255)      tctGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTTTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑gggct                                                                                                                  >  1:3269264/1‑121 (MQ=255)        tGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑gggctga                                                                                                                <  1:3269041/124‑6 (MQ=255)           aaGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCa                                                                                                            <  1:3269044/125‑1 (MQ=255)           aaGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCa                                                                                                            <  1:3269047/125‑1 (MQ=255)            aGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCAt                                                                                                           >  1:3269293/1‑125 (MQ=255)            aGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCAt                                                                                                           >  1:3269393/1‑125 (MQ=255)              ccATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATc                                                                                                          >  1:3269337/1‑124 (MQ=255)                aTCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑GGTCTGATCCATCTTc                                                                                                       >  1:3269621/1‑125 (MQ=255)                 tCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCa                                                                                                      >  1:3269153/1‑125 (MQ=255)                 tCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCa                                                                                                      >  1:3269358/1‑125 (MQ=255)                   gcgcAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGc                                                                                                    >  1:3269292/1‑125 (MQ=255)                     gcAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCa                                                                                                  >  1:3269232/1‑125 (MQ=255)                     gcAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCa                                                                                                  <  1:3269053/125‑1 (MQ=255)                     gcAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCAGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGc                                                                                                    >  1:3269062/1‑123 (MQ=255)                      cAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCg                                                                                                         <  1:3269054/117‑1 (MQ=255)                      cAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCAc                                                                                                 >  1:3269265/1‑125 (MQ=255)                      cAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCAc                                                                                                 <  1:3269055/125‑1 (MQ=255)                         gCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGAt                                                                                              >  1:3269177/1‑125 (MQ=255)                         gCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGAt                                                                                              <  1:3269057/125‑1 (MQ=255)                          ccGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATg                                                                                             >  1:3269287/1‑125 (MQ=255)                            gACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCa                                                                                                            <  1:3269059/108‑1 (MQ=255)                             aCTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATg                                                                                             >  1:3269399/1‑122 (MQ=255)                                tCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAg                                                                                       <  1:3269060/125‑1 (MQ=255)                                  attgattgTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGcc                                                                                     >  1:3269388/1‑125 (MQ=255)                                   ttgattgTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGccc                                                                                    >  1:3269344/1‑125 (MQ=255)                                       ttgttattgttGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATTACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCATGATGGATCAGCCCgcgc                                                                                >  1:3269323/1‑125 (MQ=255)                                       ttgttattgttGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGccc                                                                                    >  1:3269414/1‑121 (MQ=255)                                       ttgttattgttGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCgcgc                                                                                >  1:3269430/1‑125 (MQ=255)                                         gttattgttGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGccc                                                                              <  1:3269067/125‑1 (MQ=255)                                          ttattgttGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCt                                                                             >  1:3269342/1‑125 (MQ=255)                                            attgttGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGc                                                                           >  1:3269253/1‑125 (MQ=255)                                                 tgtCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGc                                                                      <  1:3269072/125‑1 (MQ=255)                                                 tgtCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGc                                                                      <  1:3269071/125‑1 (MQ=255)                                                  gtCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGcc                                                                     >  1:3269247/1‑125 (MQ=255)                                                  gtCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGcc                                                                     >  1:3269450/1‑125 (MQ=255)                                                   tCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCg                                                                    >  1:3269412/1‑125 (MQ=255)                                                   tCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCg                                                                    >  1:3269244/1‑125 (MQ=255)                                                    cATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCgg                                                                   <  1:3269075/125‑1 (MQ=255)                                                        gcgGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGc                                                                >  1:3269392/1‑124 (MQ=255)                                                         cgGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCAc                                                              >  1:3269345/1‑125 (MQ=255)                                                         cgGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCAc                                                              <  1:3269081/125‑1 (MQ=255)                                                         cgGACTCTATGTCTGAAGCGTTGCGCCAAACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCa                                                                                        <  1:3269080/99‑1 (MQ=255)                                                           gTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACgc                                                            >  1:3269397/1‑125 (MQ=255)                                                            tctctcTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCCGGCCGGTGCACgc                                                            >  1:3269365/1‑124 (MQ=255)                                                            tctctcTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCCGGCCGGTGCACgc                                                            >  1:3269183/1‑124 (MQ=255)                                                             ctctctGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACgcag                                                          <  1:3269082/125‑1 (MQ=255)                                                             ctctctGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACgcag                                                          <  1:3269084/125‑1 (MQ=255)                                                              tctctGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATg                                                                                             >  1:3269441/1‑89 (MQ=255)                                                              tctctGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCAc                                                              <  1:3269085/120‑1 (MQ=255)                                                              tctctGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACgcag                                                          >  1:3269401/1‑124 (MQ=255)                                                                  tgtctgAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACa                                                     >  1:3269341/1‑125 (MQ=255)                                                                    tctgAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAgg                                                   >  1:3269367/1‑125 (MQ=255)                                                                    tctgAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTGTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGccc                                                                              <  1:3269088/98‑1 (MQ=255)                                                                     ctgAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAggt                                                  <  1:3269089/125‑1 (MQ=255)                                                                       gAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCAt                                                                                                           <  1:3269092/66‑1 (MQ=255)                                                                        aaGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAgg                                                   >  1:3269346/1‑121 (MQ=255)                                                                            gTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAg                                           >  1:3269394/1‑125 (MQ=255)                                                                            gTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAg                                           >  1:3269281/1‑125 (MQ=255)                                                                            gTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAg                                           <  1:3269094/125‑1 (MQ=255)                                                                               gcgcCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAg                                        >  1:3269421/1‑125 (MQ=255)                                                                                    aGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCgcc                                   >  1:3269205/1‑125 (MQ=255)                                                                                       cTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCgccgag                                >  1:3269306/1‑125 (MQ=255)                                                                                        tAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATc                                                                                                              >  1:3269411/1‑46 (MQ=255)                                                                                         aaGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCgccgagcc                              <  1:3269103/125‑1 (MQ=255)                                                                                         aaGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑ggg                                                                                                                    >  1:3269378/1‑38 (MQ=255)                                                                                             gCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCa                                         <  1:3269104/110‑1 (MQ=255)                                                                                             gCTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGAc                           <  1:3269105/124‑1 (MQ=255)                                                                                              cTGGATGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAg                         >  1:3269296/1‑125 (MQ=255)                                                                                                 gATGACGGGCAGAACAGACGTGTTGCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGTGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCga                      <  1:3269106/125‑1 (MQ=255)                                                                                                  aTGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCgag                     <  1:3269109/125‑1 (MQ=255)                                                                                                  aTGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACACGTGGTCAAGCAGGCGCCGAGCCGACAGCgag                     >  1:3269542/1‑125 (MQ=255)                                                                                                   tGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCgaga                    <  1:3269110/125‑1 (MQ=255)                                                                                                   tGACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCg                       <  1:3269111/122‑1 (MQ=255)                                                                                                    gACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCgaga                    >  1:3269633/1‑124 (MQ=255)                                                                                                    gACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGagag                   <  1:3269112/125‑1 (MQ=255)                                                                                                    gACGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGagag                   <  1:3269113/125‑1 (MQ=255)                                                                                                     aCGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGc                  >  1:3269435/1‑125 (MQ=255)                                                                                                      cGGGCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCg                 >  1:3269395/1‑125 (MQ=255)                                                                                                       gggCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCATGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCg                 >  1:3269196/1‑124 (MQ=255)                                                                                                       gggCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCgt                >  1:3269326/1‑125 (MQ=255)                                                                                                        ggCAGAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCgtg               >  1:3269398/1‑125 (MQ=255)                                                                                                           aGAAAACACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGtgtg             <  1:3269115/124‑1 (MQ=255)                                                                                                            gAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAATCAGGCGCCGAGCCGACAGCGAGAGCGTGTGcc           <  1:3269116/125‑1 (MQ=255)                                                                                                            gAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGcc           >  1:3269359/1‑125 (MQ=255)                                                                                                            gAAAAGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGcc           >  1:3269369/1‑125 (MQ=255)                                                                                                             aaaaGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCg          <  1:3269117/125‑1 (MQ=255)                                                                                                               aaGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCGGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGt        <  1:3269119/125‑1 (MQ=255)                                                                                                               aaGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGt        <  1:3269118/125‑1 (MQ=255)                                                                                                                aGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCg          <  1:3269123/122‑1 (MQ=255)                                                                                                                aGACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTc       <  1:3269124/125‑1 (MQ=255)                                                                                                                 gACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTcg      >  1:3269246/1‑125 (MQ=255)                                                                                                                 gACGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGAAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTcg      >  1:3269429/1‑125 (MQ=255)                                                                                                                   cGTGTTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTcgcg    <  1:3269127/125‑1 (MQ=255)                                                                                                                    gtgtTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTcgcg    >  1:3269321/1‑124 (MQ=255)                                                                                                                     tgtTTCGCGGG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCa  >  1:3269546/1‑125 (MQ=255)                                                                                                                             |                                                                                                                      CAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTCGC‑GG‑CTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAGCGAGAGCGTGTGCCGGTCGCGCA  >  NC_002947/3845580‑3845819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑