Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,499,4971.C70.0% 359.6 / 241.0 207intergenic (+74/‑90)trpS/zapEtryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base . (6/56);  new base C (79/66);  total (85/122)
Fisher's exact test for biased strand distribution p-value = 5.24e-10
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 215 total aligned reads displayed.

GATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGTT‑T‑CGGGCAC‑G‑C‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGC  >  NC_002947/1499373‑1499612
                                                                                                                             |                                                                                                                        
gATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGtt                                                                                                                           <  1:1394838/125‑1 (MQ=255)
   gCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGtt                                                                                                                           <  2:1394841/122‑1 (MQ=255)
    cGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcg                                                                                                                       >  1:1395040/1‑121 (MQ=255)
           tCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAc‑g‑c                                                                                                             <  1:1394850/125‑1 (MQ=25)
              gagCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAc‑g‑c‑cc                                                                                                          >  2:1395110/1‑123 (MQ=21)
               agCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAc‑g‑c‑ccgc                                                                                                        >  1:1395149/1‑122 (MQ=21)
                    gAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCca                                                                                                   <  2:1394852/125‑1 (MQ=18)
                    gAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTccc                                                                                                    >  2:1395094/1‑124 (MQ=18)
                     aaCGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCcac                                                                                                  >  2:1395163/1‑125 (MQ=18)
                      aCGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCcac                                                                                                  >  1:1395239/1‑124 (MQ=18)
                      aCGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCcaca                                                                                                 <  1:1394853/125‑1 (MQ=18)
                       cGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCcaca                                                                                                 >  2:1395041/1‑124 (MQ=18)
                       cGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCca                                                                                                   <  1:1394855/122‑1 (MQ=18)
                        gAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAg                                                                                                >  1:1394918/1‑124 (MQ=18)
                           gCCTTGGCACCACAGCCGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTTCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCTGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTg                                                                                            >  1:1395253/1‑125 (MQ=18)
                              ttGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTg                                                                                            >  1:1395268/1‑122 (MQ=18)
                               tGGCACCACAGCAGGACTGAGGCTGCCAAGCGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGTCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTg                                                                                        <  1:1394858/125‑1 (MQ=17)
                                ggCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGc                                                                                       >  2:1395151/1‑125 (MQ=18)
                                ggCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGc                                                                                       <  2:1394859/125‑1 (MQ=18)
                                ggCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCCGTGCATGGCACCTGCTTTGCCGGTGttcg                                                                                                                         >  1:1395274/1‑93 (MQ=21)
                                    ccacAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCAtt                                                                                   <  2:1394862/125‑1 (MQ=18)
                                    ccacAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCAtt                                                                                   <  1:1394863/125‑1 (MQ=18)
                                      acaGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTaa                                                                                 <  2:1394865/125‑1 (MQ=18)
                                      acaGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCAtt                                                                                   <  1:1394868/123‑1 (MQ=18)
                                         gcagGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCg                                                                              >  2:1395311/1‑125 (MQ=18)
                                         gcagGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCg                                                                              <  2:1394869/125‑1 (MQ=18)
                                           agGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCggg                                                                            >  2:1394976/1‑125 (MQ=18)
                                             gACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGcc                                                                          >  1:1395123/1‑125 (MQ=18)
                                               cTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTa                                                                        >  1:1394987/1‑125 (MQ=18)
                                                tGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGAc                                                                                              >  1:1395140/1‑102 (MQ=14)
                                                tGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTAt                                                                       <  2:1394874/125‑1 (MQ=18)
                                                tGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTAt                                                                       <  1:1394875/125‑1 (MQ=18)
                                                 gAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTAt                                                                       <  1:1394877/124‑1 (MQ=18)
                                                   ggCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCg                                                                     <  1:1394880/124‑1 (MQ=18)
                                                    gCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTa                                                                        <  2:1394881/120‑1 (MQ=17)
                                                     cTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTa                                                                  >  2:1395070/1‑125 (MQ=18)
                                                     cTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTa                                                                  >  2:1395121/1‑125 (MQ=18)
                                                      tGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTAc                                                                 <  1:1394883/125‑1 (MQ=18)
                                                        ccAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAg                                                               <  1:1394886/125‑1 (MQ=18)
                                                         cAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCCTGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAg                                                               >  2:1395231/1‑124 (MQ=18)
                                                           aaCGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGa                                                            <  2:1394888/125‑1 (MQ=18)
                                                           aaCGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGa                                                            >  1:1395155/1‑125 (MQ=18)
                                                           aaCGGGGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAg                                                               <  1:1394889/122‑1 (MQ=18)
                                                             cGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTg                                                             <  2:1394892/122‑1 (MQ=18)
                                                              ggTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACgg                                                         <  1:1394893/125‑1 (MQ=18)
                                                               gTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGc                                                        <  2:1394895/125‑1 (MQ=18)
                                                                   gAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGt                                                    >  1:1395295/1‑125 (MQ=18)
                                                                       gggCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTa                                                                  <  1:1394902/107‑1 (MQ=17)
                                                                       gggCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGttttt                                                <  2:1394901/125‑1 (MQ=21)
                                                                       gggCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGtttt                                                 <  1:1394899/124‑1 (MQ=21)
                                                                        ggCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGtttttt                                               >  1:1395051/1‑125 (MQ=21)
                                                                        ggCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGtttttt                                               >  2:1395081/1‑125 (MQ=21)
                                                                          cGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGt                                                    <  1:1394906/118‑1 (MQ=18)
                                                                          cGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgt                                             >  2:1395000/1‑125 (MQ=21)
                                                                          cGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgt                                             <  1:1394904/125‑1 (MQ=21)
                                                                           gTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGccc                                                      >  1:1395108/1‑115 (MQ=21)
                                                                           gTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgtt                                            >  1:1395220/1‑125 (MQ=21)
                                                                             gCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGc                                          <  1:1394909/125‑1 (MQ=25)
                                                                              cccGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGcc                                         <  2:1394910/125‑1 (MQ=25)
                                                                               ccGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCt                                        <  2:1394918/125‑1 (MQ=25)
                                                                               ccGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCt                                        <  2:1394916/125‑1 (MQ=25)
                                                                               ccGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCt                                        <  2:1394914/125‑1 (MQ=25)
                                                                                 gcgAAACAGGCGCCGCGGTCCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTACCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCGCGTTTTTTGTTGCCTc                                       <  2:1394922/124‑1 (MQ=21)
                                                                                   gAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGttt                                                  <  1:1394923/111‑1 (MQ=21)
                                                                                    aaaCAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTa                                   <  1:1394926/125‑1 (MQ=25)
                                                                                     aaCAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTATGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTaa                                  <  2:1394928/125‑1 (MQ=25)
                                                                                      aCAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAAc                                 <  1:1394930/125‑1 (MQ=25)
                                                                                        aGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAAc                                 <  2:1394933/123‑1 (MQ=25)
                                                                                        aGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTaa                                  <  2:1394931/122‑1 (MQ=25)
                                                                                         ggCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGa                               <  2:1394937/124‑1 (MQ=25)
                                                                                          gcgcCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGaa                              >  2:1395191/1‑124 (MQ=25)
                                                                                           cgccgcGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGa                               <  2:1394939/122‑1 (MQ=25)
                                                                                             ccgcGGTGCATGGCAGCGGCTGTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTaa                                  <  1:1394942/117‑1 (MQ=25)
                                                                                             ccgcGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCAt                          <  2:1394941/125‑1 (MQ=25)
                                                                                               gcgGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTaa                                  <  1:1394945/115‑1 (MQ=25)
                                                                                                cgGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGAc                       >  1:1395169/1‑125 (MQ=25)
                                                                                                cgGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGAc                       >  2:1395206/1‑125 (MQ=25)
                                                                                                 ggTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACt                      <  2:1394947/125‑1 (MQ=25)
                                                                                                  gTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGa                        <  1:1394949/122‑1 (MQ=25)
                                                                                                  gTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑G‑C‑CTGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTc                     >  1:1395232/1‑125 (MQ=37)
                                                                                                   tGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTcc                    >  1:1395198/1‑125 (MQ=37)
                                                                                                    gCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTccc                   <  2:1394951/125‑1 (MQ=37)
                                                                                                    gCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTcc                    <  1:1394952/124‑1 (MQ=25)
                                                                                                     cATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTcc                    >  2:1395172/1‑123 (MQ=37)
                                                                                                     cATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt                  >  2:1395065/1‑125 (MQ=25)
                                                                                                     cATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt                  <  1:1394955/125‑1 (MQ=37)
                                                                                                       tggcaccGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTa                <  2:1394957/119‑1 (MQ=37)
                                                                                                       tggcaccGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTa                <  1:1394958/119‑1 (MQ=37)
                                                                                                       tggcaccGGCTTTGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTcc                    >  1:1395091/7‑121 (MQ=37)
                                                                                                        ggcagcGGCTTTGCCGCTGTTCG‑CGTGCACTC‑C‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACTGTTACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTcc                    <  1:1394994/115‑1 (MQ=255)
                                                                                                        ggcaccGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTa                >  2:1395278/6‑124 (MQ=37)
                                                                                                         gcaccGGCTTTGCCGGTGTTCT‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCCCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGa              >  2:1395265/5‑125 (MQ=38)
                                                                                                         gcaccGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAg               >  1:1395066/5‑124 (MQ=37)
                                                                                                           accGGCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAAc            <  1:1394962/123‑1 (MQ=38)
                                                                                                              ggCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGc          <  2:1394965/124‑1 (MQ=38)
                                                                                                              ggCTTTGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCt         >  1:1395100/1‑125 (MQ=38)
                                                                                                                 tttGCCGGTGTT‑CGCGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATc      <  1:1394968/125‑1 (MQ=38)
                                                                                                                  ttGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCa     <  2:1394969/125‑1 (MQ=39)
                                                                                                                   tGCCGGTGTTCG‑CGGGCAC‑GCC‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTAt       >  1:1395367/1‑122 (MQ=39)
                                                                                                                    gCCGGTGTTCG‑CGGGCAC‑G‑CGC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAg   <  1:1394972/125‑1 (MQ=255)
                                                                                                                             |                                                                                                                        
GATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGTT‑T‑CGGGCAC‑G‑C‑C‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGC  >  NC_002947/1499373‑1499612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑