New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4808173 =	21 (0.110)	17 (0.090)	10/238	21.1	21.4%	intergenic (‑282/‑273)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 4945372	104 (0.540)					intergenic (+732/+66)	PP_5673/flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
Rejected: Coverage evenness skew score above cutoff.

GGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4808297‑4808173 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcAAGCTCGCTCCTACATTTGTTTCGGGCCAGTCCCTCCTGTGCCCGGCGCGCGCGACCGCCTTGTTTGTACGGCGCAATATCGAGGTGTACGCGAAGGCGGTCGCGCGTAAATCCCGCAGGAATA  <  NC_002947/4945372‑4945249                                                                                                                                                                                                                                                           GGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGG                                                                                                                               <  1:3807594/124‑1              TGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTA                                                                                                                 <  1:3807668/125‑1                 GGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACgt                                                                                                              <  2:3807575/125‑3                 GGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACg                                                                                                               <  2:3807706/124‑2                  GGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTT                                                                                                             <  1:3807626/125‑1                   GGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTT                                                                                                            <  1:3807597/125‑1                   GGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTATTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTT                                                                                                            <  2:3807599/125‑1                    GGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTG                                                                                                           <  2:3807663/125‑1                       GGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTT                                                                                                        <  2:3807644/125‑1                       GGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTT                                                                                                         <  1:3807572/124‑1                          GTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGTTCCTACGTTTGTTTCG                                                                                                      <  2:3807562/124‑1                             GGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGcca                                                                                                  <  1:3807580/125‑4                              GAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGccag                                                                                                 <  1:3807595/125‑5                              GAATTTTGAGTGGACGACGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGccag                                                                                                 <  2:3807623/125‑5                                                       TTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGA                                                                       <  2:3807587/125‑1                                                             GGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCT                                                                 <  2:3807561/125‑1                                                             GGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCT                                                                 <  1:3807609/125‑1                                                                  TTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGTT                                                             <  2:3807619/124‑1                                                                                                                             CAAGCTCGCTCCTACATTTGTTTCGGGCCAGTCCCTCCTGTGCCCGGCGCGCGCGACCGCCTTGTTTGTACGGCGCAATATCGAGGTGTACGCGAAGGCGGTCGCGCGTAAATCCCGCAGGAATA  <  2:3908926/125‑1                                                                                                                                                                                                                                                           GGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4808297‑4808173 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcAAGCTCGCTCCTACATTTGTTTCGGGCCAGTCCCTCCTGTGCCCGGCGCGCGCGACCGCCTTGTTTGTACGGCGCAATATCGAGGTGTACGCGAAGGCGGTCGCGCGTAAATCCCGCAGGAATA  <  NC_002947/4945372‑4945249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.