| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4808193 = | 20 (0.100) | 12 (0.070) | 4/228 | 24.8 | 15.8% | intergenic (‑302/‑253) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947 | = 4945201 | 109 (0.590) | intergenic (+561/+237) | PP_5673/flhB | D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTGTTGTTGGATTTTCGAGGGGAGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4808323‑4808193‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgcGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTCACGGCGAACACCCCGATTCACAGCAGATCACAAAGTTGGAAAGCTTCTAGCAATGCCAGCCGCAGGCGCCCCCTGGGCGTCAAAGTT < NC_002947/4945201‑4945078 TTGTTGTTGGATTTTCGAGGGGAGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAG < 2:3807641/125‑1TTGTTGTTGGATTTTCGAGGGGAGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAG < 1:3807576/125‑1 TTGTTGGATTTTCGAGGGGAGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGC < 2:3807605/125‑1 GATTTTCGAGGGGAGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGTAGGATTTTCAGCGCCTGTGAGATCGAG < 2:3807637/116‑1 TGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCCCAGGC > 2:3807548/1‑125 GAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCCCAGGCGctg > 2:3807547/1‑117 GAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACC > 1:3807544/1‑125 GAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACC > 1:3807543/1‑125 ATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCtc > 2:3807542/1‑123 TTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCtccc > 2:3807541/1‑121 ACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGC < 2:3807690/60‑1 GAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGC < 2:3807710/54‑1 ttGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGACAAAAACCTCACGGCGAACACCCCGATTCACAGCAGATCACAAAGTTGGAAAGCTTCTAGCAATGCCAGCCGCAG > 1:3908721/3‑125 CCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGACAAAACCCTCACGGCGAACACCCCGATTCACAGCAGATCACAAAGTTGGAAAGCTTCTAGCAATGCCAGCCGCAGGC < 1:3908904/124‑1 CCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGACAAAAACCTCACGGCGAACACCCCGATTCACAGCAGATCACAAAGTTGGAAAGCTTCTAGCAATGCCAGCCGCAGGCG < 1:3909045/125‑1 GAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGACAAAAACCTCACGGCGAACACCCCGATTCACAGCAGATCACAAAGTTGGAAAGCTTCTAGCAATGCCAGCCGCAGGCGCCCCC > 2:3908712/1‑125 gcgctgGCGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTCACGGCGAACACCCCGATTCACAGCAGATCACAAAGTTGGAAAGCTTCTAGCAATGCCAGCCGCAGGCGCCCCCTGGGCGT > 1:3908704/7‑125 AGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTCACGGCGAACACCCCGATTCACAGCAGATCACAAAGTTGGAAAGCTTCTAGCAATGCCAGCCGCAGGCGCCCCCTGGGCG > 2:3908709/1‑124 AGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGACAAAAACCTCACGGCGAACACCCCGATTCACAGCAGATCACAAAGTTGGAAAGCTTCTAGCAATGCCAGCCGCAGGCGCCCCCTGGGCGT > 1:3908705/1‑125 GCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTCACGGCGAACACCCCGATTCACAGCAGATCACAAAGTTGGAAAGCTTCTAGCAATGCCAGCCGCAGGCGCCCCCTGGGCGTC < 2:3908722/125‑1 GCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTCACGGCGAACACCCCGATTCACAGCAGATCACAAAGTTGGAAAGCTTCTAGCAATGCCAGCCGCAGGCGCCCCCTGGGCGTC > 2:3908703/1‑125 GCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTCACGGCGAACACCCCGATTCACAGCAGATCACAAAGTTGGAAAGCTTCTAGCAATGCCAGCCGCAGGCGCCCCCTGGGCGTC < 2:3908912/125‑1 GCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGACAAAAACCTCACGGCGAACACCCCGATTCACAGCAGATCACAAAGTTGGAAAGCTTCTAGCAATGCCAGCCGCAGGCGCCCCCTGGGCGT < 1:3909018/124‑1 CGCCGCGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTCACGGCGAACACCCCGATTCACAGCAGATCACAAAGTTGGAAAGCTTCTAGCAATGCCAGCCGCAGGCGCCCCCTGGGCGTCA > 1:3908702/1‑125 CGCCGCGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTCACGGCGAACACCCCGATTCACAGCAGATCACAAAGTTGGAAAGCTTCTAGCAATGCCAGCCGCAGGCGCCCCCTGGGCGTCA < 1:3908882/125‑1 GCCGCGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTCACGGCGAACACCCCGATTCACAGCAGATCACAAAGTTGGAAAGCTTCTAGCAATGCCAGCCGCAGGCGCCCCCTGGGCGTCAA > 2:3908701/1‑125 CGCCCGCGCGGCGCTCGATCTCACAGGCGACAAAAACCTCACGGCGAACACCCCGATTCACAGCAGATCACAAAGTTGGAAAGCTTCTAGCAATGCCAGCCGCAGGCGCCCCCTGGGC < 1:3908880/118‑1 CGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTCACGGCGAACACCCCGATTCACAGCAGATCACAAAGTTGGAAAGCTTCTAGCAATGCCAGCCGCAGGCGCCCCCTGGGCGTCAAAGTT < 2:3908842/125‑1 TTGTTGTTGGATTTTCGAGGGGAGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4808323‑4808193‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgcGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTCACGGCGAACACCCCGATTCACAGCAGATCACAAAGTTGGAAAGCTTCTAGCAATGCCAGCCGCAGGCGCCCCCTGGGCGTCAAAGTT < NC_002947/4945201‑4945078 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |