BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_002947	1,499,508	+C	intergenic (+85/‑79)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	1,499,506	1	.	C	99.4%	194.5 / ‑3.6	153	intergenic (+83/‑81)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (67/85); total (67/86)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01

Only 100 of 155 total aligned reads displayed.

AGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGT‑T‑T‑CGGGCACG‑C‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACG  >  NC_002947/1499386‑1499624

agagCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑T‑CGCGGGCAcg                                                                                                                          >  2:1192334/1‑122 (MQ=25)

   gCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCAcg‑c‑ccg                                                                                                                    >  2:1192259/1‑121 (MQ=21)

            aaGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGa                                                                                                           <  2:1192106/124‑1 (MQ=18)

             aGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGa                                                                                                           >  1:1192252/1‑123 (MQ=18)

             aGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGAc                                                                                                          <  1:1192108/124‑1 (MQ=18)

               ccTTGGCACCACAGCAGGATTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACt                                                                                                         <  1:1192109/123‑1 (MQ=17)

                 ttGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑T‑CGCGGGCACGCC‑CGCTCCCACAGACTGAt                                                                                                      <  2:1192111/124‑1 (MQ=18)

                        cacaGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCAt                                                                                                <  1:1192113/123‑1 (MQ=18)

                        cacaGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTCT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCAt                                                                                                <  1:1192114/123‑1 (MQ=18)

                         acaGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCAt                                                                                                >  1:1192326/1‑122 (MQ=17)

                             cagGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCAt                                                                                                <  2:1192121/118‑1 (MQ=17)

                             cagGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGc                                                                                           <  1:1192119/123‑1 (MQ=18)

                             cagGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑T‑CGCGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAg                                                                                            <  1:1192117/122‑1 (MQ=18)

                              agGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑T‑CGCGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCg                                                                                          <  1:1192122/123‑1 (MQ=18)

                               ggACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑T‑CGCGGGCACGCC‑CGCTCCCACAGACTGa                                                                                                       <  2:1192123/109‑1 (MQ=14)

                                gACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑T‑CGCGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCggg                                                                                        <  1:1192126/123‑1 (MQ=18)

                                  cTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGc                                                                                           >  1:1192292/1‑118 (MQ=17)

                                  cTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCt                                                                                     >  2:1192322/1‑124 (MQ=18)

                                   tGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCATTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTa                                                                                    <  2:1192128/124‑1 (MQ=18)

                                    gAGGCTGCCAAACGGTGGGAGCGGGCATGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTa                                                                                    <  1:1192130/123‑1 (MQ=18)

                                     aGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATc                                                                                  >  2:1192289/1‑124 (MQ=18)

                                      ggCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATc                                                                                  >  2:1192297/1‑123 (MQ=18)

                                       gCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑T‑CGCGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGc                                                                                <  2:1192134/124‑1 (MQ=18)

                                       gCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑T‑CGCGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGc                                                                                <  2:1192131/124‑1 (MQ=18)

                                       gCTGCCAAACGGGGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑T‑CGCGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGc                                                                                <  1:1192132/124‑1 (MQ=18)

                                         tGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCg                                                                                 >  2:1192394/1‑121 (MQ=17)

                                          gCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑T‑CGCGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATc                                                                                  <  2:1192136/119‑1 (MQ=17)

                                           ccAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGGTTGCCATTAAGCGGGCCTATCGCTACa                                                                            >  1:1192438/1‑124 (MQ=18)

                                             aaaCGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACa                                                                            <  2:1192140/122‑1 (MQ=18)

                                             aaaCGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAg                                                                           <  1:1192138/123‑1 (MQ=18)

                                             aaaCGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGt                                                                          >  2:1192279/1‑124 (MQ=18)

                                              aaCGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGt                                                                          >  1:1192444/1‑123 (MQ=18)

                                                cGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGAc                                                                       >  1:1192278/1‑124 (MQ=18)

                                                cGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑T‑CGCGGGCACGCC‑CGCTCCCGCAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGa                                                                        <  1:1192141/123‑1 (MQ=18)

                                                  gTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTAC‑G‑CGGGCACG‑CTCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACgg                                                                     <  2:1192143/124‑1 (MQ=18)

                                                  gTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑T‑CGCGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACgg                                                                     <  1:1192144/124‑1 (MQ=18)

                                                     ggAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGcc                                                                   >  1:1192277/1‑123 (MQ=18)

                                                       aGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGt                                                                <  1:1192146/124‑1 (MQ=18)

                                                       aGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑T‑CGCGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGcc                                                                   <  2:1192147/121‑1 (MQ=18)

                                                        gCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGccc                                                                  >  1:1192307/1‑121 (MQ=18)

                                                         cGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGtt                                                               <  2:1192149/123‑1 (MQ=18)

                                                           ggCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACCGc                                                                    >  1:1192304/1‑116 (MQ=18)

                                                           ggCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑T‑CGCGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGcc                                                                   <  2:1192150/117‑1 (MQ=18)

                                                            gCGAGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGtttttt                                                           <  2:1192152/124‑1 (MQ=21)

                                                             cGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttg                                                          <  1:1192153/124‑1 (MQ=21)

                                                              gTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgt                                                         >  1:1192348/1‑124 (MQ=21)

                                                              gTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgt                                                         >  2:1192248/1‑124 (MQ=21)

                                                               tGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGccc                                                                  >  1:1192401/1‑114 (MQ=18)

                                                               tGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑T‑CGCGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgt                                                         <  2:1192154/123‑1 (MQ=21)

                                                               tGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCAGCTTTGCCGGTGT‑TCG‑CGGGCCCGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgt                                                         >  1:1192225/1‑123 (MQ=21)

                                                                 cccGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CTCTCCCACAGACTGATTTCCATTAAGCGGGCCTATCGCTAGAGTGACGGCCCg                                                                 <  1:1192157/113‑1 (MQ=18)

                                                                 cccGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGc                                                      >  2:1192377/1‑124 (MQ=21)

                                                                 cccGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGc                                                      >  1:1192270/1‑124 (MQ=21)

                                                                   cgcgAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCAt                                                                                                <  2:1192159/80‑1 (MQ=11)

                                                                   cgcgAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGccc                                                                  >  2:1192342/1‑110 (MQ=21)

                                                                   cgcgAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCt                                                    <  1:1192158/124‑1 (MQ=21)

                                                                   cgcgAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCt                                                    >  2:1192299/1‑124 (MQ=25)

                                                                   cgcgAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑T‑CGCGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCt                                                    <  2:1192160/124‑1 (MQ=25)

                                                                    gcgAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCt                                                    >  1:1192352/1‑123 (MQ=25)

                                                                       aaaCAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCt                                                >  1:1192320/1‑124 (MQ=25)

                                                                       aaaCAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑T‑CGCGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGc                                                 <  2:1192163/123‑1 (MQ=25)

                                                                        aaCAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTa                                               >  2:1192427/1‑124 (MQ=25)

                                                                        aaCAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑T‑CGCGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgt                                                         <  2:1192164/114‑1 (MQ=21)

                                                                         aCAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgtt                                                        <  1:1192166/114‑1 (MQ=25)

                                                                         aCAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTaa                                              <  1:1192165/124‑1 (MQ=25)

                                                                          cAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTaa                                              <  1:1192168/123‑1 (MQ=25)

                                                                             gcgcCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑T‑CGCGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGaa                                          <  2:1192171/124‑1 (MQ=25)

                                                                                ccgcGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGTCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAAt                                         >  1:1192460/1‑122 (MQ=25)

                                                                                ccgcGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACg                                            >  2:1192443/1‑119 (MQ=25)

                                                                                 cgcgGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCAt                                      >  2:1192381/1‑124 (MQ=25)

                                                                                 cgcgGTGCATGGCACCGGCTTTGCCGGTGT‑T‑CGCGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCa                                       <  2:1192173/123‑1 (MQ=25)

                                                                                  gcgGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCAt                                      >  2:1192395/1‑123 (MQ=25)

                                                                                     gTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGAc                                   <  2:1192174/123‑1 (MQ=25)

                                                                                      tGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTc                                 >  1:1192409/1‑124 (MQ=37)

                                                                                       gCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTa                                               <  2:1192176/109‑1 (MQ=25)

                                                                                       gCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTcc                                >  1:1192329/1‑124 (MQ=37)

                                                                                          tggcaccGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGTCTcc                                >  2:1192256/7‑121 (MQ=25)

                                                                                          tggcaccGGCTTTGCCGGTGT‑T‑CGCGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCtt                             <  2:1192180/118‑1 (MQ=37)

                                                                                           ggcaccGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCtt                             <  1:1192181/118‑1 (MQ=37)

                                                                                           ggcaccGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCtt                             >  1:1192404/6‑123 (MQ=37)

                                                                                            gcaccGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACt                                  <  1:1192182/113‑1 (MQ=37)

                                                                                            gcaccGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTccc                               >  1:1192345/5‑120 (MQ=37)

                                                                                            gcaccGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTa                            >  1:1192191/5‑123 (MQ=37)

                                                                                            gcaccGGCTTTGCCGGTGT‑T‑CGCGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt                              <  2:1192184/117‑1 (MQ=37)

                                                                                              accGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGaa                         >  1:1192463/3‑124 (MQ=38)

                                                                                               ccGGCTTTGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGaa                         >  1:1192335/2‑123 (MQ=38)

                                                                                                   cTTTGCCGGTGT‑T‑CGCGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTa                    <  2:1192185/124‑1 (MQ=38)

                                                                                                     ttGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTAt                   <  2:1192188/123‑1 (MQ=38)

                                                                                                     tggCCGGTGT‑T‑CGCGGGCCCGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTaa                                              <  2:1192204/94‑1 (MQ=37)

                                                                                                      tGCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTa                    >  1:1192531/1‑121 (MQ=39)

                                                                                                       gCCGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCa                 >  1:1192386/1‑123 (MQ=39)

                                                                                                        ccGGTGT‑TCG‑CGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTa                            <  2:1192189/111‑1 (MQ=38)

                                                                                                                ttcgcGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGAt          >  1:1192373/5‑123 (MQ=255)

                                                                                                                ttcgcGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATc         <  2:1192193/120‑1 (MQ=255)

                                                                                                                   gcGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTg       <  1:1192195/122‑1 (MQ=255)

                                                                                                                    cGGGCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGaa     >  1:1192414/1‑124 (MQ=255)

                                                                                                                     gggCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACGGTGACGGCCCGTGTTTTGTTGCCTCGCTAACGAATCATGa                                    >  2:1192417/1‑92 (MQ=255)

                                                                                                                      ggCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGaaa    <  2:1192200/123‑1 (MQ=255)

                                                                                                                      ggCACGCC‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAAc   <  1:1192199/124‑1 (MQ=255)

                                                                                                                      ggCACGCC‑CGCTCCCACAGACTGATTGCCATGAAGCGGGACTATCGCTACAGTGACGGCCCGtttt                                                             <  2:1192198/66‑1 (MQ=38)

AGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGT‑T‑T‑CGGGCACG‑C‑CGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACG  >  NC_002947/1499386‑1499624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`