breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 278,744 +A intergenic (‑239/+75) PP_0224 ← / ← sctC DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
RA 307,866 +C intergenic (+881/‑988) hslO → / → PP_0254 molecular chaperone HslO/hypothetical protein
RA 336,125 +T coding (210/237 nt) PP_0278 → hypothetical protein
RA 353,067 A→G intergenic (+34/+84) hisF → / ← cbcV imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
RA 499,203 A→G intergenic (+47/‑249) uhpA → / → PP_0411 two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
RA 1,070,248 +GA intergenic (+48/+94) aroP‑I → / ← PP_0928 aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA 1,126,647 +C intergenic (‑101/+48) tdcG‑II ← / ← gcvP‑I L‑serine dehydratase/glycine dehydrogenase
RA 1,419,549 +C intergenic (‑38/+98) PP_1242 ← / ← PP_1244 hypothetical protein/hypothetical protein
RA 1,499,480 2 bp→AC intergenic (+57/‑106) trpS → / → zapE tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA 1,499,508 +C intergenic (+85/‑79) trpS → / → zapE tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA 1,932,640 +C intergenic (‑107/+43) rluA ← / ← minE bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor
RA 2,958,523 C→T A428V (GCA→GTA)  PP_2589 → aldehyde dehydrogenase family protein
RA 3,845,705 +G intergenic (‑72/+26) PP_3394 ← / ← PP_3395 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA 3,951,159 T→C intergenic (‑123/+72) PP_3486 ← / ← PP_3487 cytochrome c/hypothetical protein
RA 3,951,161 A→T intergenic (‑125/+70) PP_3486 ← / ← PP_3487 cytochrome c/hypothetical protein
RA 4,586,030 2 bp→TC intergenic (+113/+101) PP_4061 → / ← PP_4063 hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA 4,586,035 +G intergenic (+118/+97) PP_4061 → / ← PP_4063 hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA 4,586,057 +C intergenic (+140/+75) PP_4061 → / ← PP_4063 hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA 4,740,811 (T)7→6 intergenic (+48/+705) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,740,816 T→G intergenic (+53/+700) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,740,819 2 bp→CT intergenic (+56/+696) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,255 C→T intergenic (+492/+261) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,257 A→C intergenic (+494/+259) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,260 2 bp→GC intergenic (+497/+255) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,263 A→C intergenic (+500/+253) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,272 A→G intergenic (+509/+244) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,274 A→C intergenic (+511/+242) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,276 G→C intergenic (+513/+240) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,278 C→T intergenic (+515/+238) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,283 +T intergenic (+520/+233) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,289 C→G intergenic (+526/+227) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,292 C→T intergenic (+529/+224) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,294 C→G intergenic (+531/+222) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,296 A→C intergenic (+533/+220) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,298 C→T intergenic (+535/+218) gltA → / ← yeiW citrate synthase/putative oxidoreductase
JC 4,980,585 +GGC intergenic (‑24/+44) PP_4387 ← / ← flgE hypothetical protein/flagellar hook protein FlgE
JC 5,555,608 +GCC intergenic (‑84/+87) PP_4887 ← / ← PP_4888 hypothetical protein/methyl‑accepting chemotaxis transducer
RA 5,674,751 +G intergenic (+113/+27) rhlE‑II → / ← yceI ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA 5,674,753 G→C intergenic (+115/+25) rhlE‑II → / ← yceI ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
JC 5,681,415 +CGGG intergenic (‑133/+71) PP_4986 ← / ← PP_4987 hemolysin III family channel protein/putative Chemotaxis protein
RA 5,740,555 C→T S175N (AGC→AAC)  PP_5037 ← lipocalin family lipoprotein
RA 6,013,885 T→C intergenic (+90/+20) xpt → / ← PP_5266 xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947 171340–172964 176319–175365 2402–4980 81 [79] [76] 80 PP_16SA–[PP_5SA] PP_16SA,PP_23SA,[PP_5SA]
* * ÷ NC_002947 176630–178394 181725–180795 2402–5096 83 [79] [79] 82 PP_16SB–[PP_r01] PP_16SB,PP_23SB,[PP_r01]
* * ÷ NC_002947 207518–208119 208931–208220 102–1414 80 [77] [75] 80 PP_0168 putative surface adhesion protein
* * ÷ NC_002947 215453–216054 216874–216155 102–1422 81 [78] [79] 81 PP_0168 putative surface adhesion protein
* * ÷ NC_002947 528006–528542 529632–528925 384–1627 80 [79] [78] 80 PP_23SC 23S ribosomal RNA
* * ÷ NC_002947 699764–701630 702685–702013 384–2922 84 [78] [74] 80 [PP_23SD] [PP_23SD]
* * ÷ NC_002947 741536–742255 743315–742545 291–1780 83 [79] [78] 85 [PP_0635] [PP_0635]
* * ÷ NC_002947 745007–745904 746916–746029 126–1910 82 [79] [79] 84 [PP_0637]–PP_0638 [PP_0637],PP_0638
* * ÷ NC_002947 1296561–1297218 1298476–1297487 270–1916 83 [78] [79] 80 PP_1133 PP_1133
* * ÷ NC_002947 1327185–1328840 1330454–1329479 640–3270 83 [75] [79] 81 PP_23SE–[PP_5SE] PP_23SE,[PP_5SE]
* * ÷ NC_002947 1440063–1440733 1441995–1441002 270–1933 80 [79] [78] 80 PP_1260 PP_1260
* * ÷ NC_002947 2085832–2087121 2087121 1–1290 80 [79] [79] 80 [PP_1865] [PP_1865]
* * ÷ NC_002947 2256595–2258145 2258145 1–1551 80 [77] [79] 80 PP_1990 PP_1990
* * ÷ NC_002947 2413061–2414406 2414406 1–1346 82 [78] [79] 80 [PP_2114] [PP_2114]
* * ÷ NC_002947 2529178–2530831 2530831 1–1654 80 [78] [78] 80 PP_2218–[PP_2219] PP_2218,[PP_2219]
* * ÷ NC_002947 2551388–2552240 2553851–2552879 640–2464 80 [76] [79] 81 [PP_23SF]–[PP_5SF] [PP_23SF],[PP_5SF]
* * ÷ NC_002947 2869335–2870646 2870646 1–1312 81 [79] [78] 80 [PP_2522] [PP_2522]
* * ÷ NC_002947 2937731–2938380 2939320–2938649 270–1590 81 [78] [78] 82 [PP_2570] [PP_2570]
* * ÷ NC_002947 3522877–3523516 3525126–3524455 940–2250 81 [79] [79] 81 PP_3113–[PP_3115] PP_3113,PP_3114,[PP_3115]
* * ÷ NC_002947 3826309–3827302 3828240–3827571 270–1932 80 [77] [75] 81 PP_3381 PP_3381
* * ÷ NC_002947 3969340–3969930 3971574–3970929 1000–2235 80 [79] [79] 80 PP_3499–[PP_3501] PP_3499,PP_3500,[PP_3501]
* * ÷ NC_002947 4073743–4074740 4075678–4075009 270–1936 80 [78] [79] 84 PP_3586 PP_3586
* * ÷ NC_002947 4391598–4392369 4393378–4392659 291–1781 80 [79] [76] 83 [PP_3868] [PP_3868]
* * ÷ NC_002947 4486378–4486960 4488606–4487959 1000–2229 82 [79] [78] 83 PP_3979–[PP_3981] PP_3979,PP_3980,[PP_3981]
* * ÷ NC_002947 4493401–4494073 4495639–4495012 940–2239 80 [78] [79] 82 [PP_3984]–PP_3986 [PP_3984],PP_3985,PP_3986
* * ÷ NC_002947 4536277–4537135 4538159–4537260 126–1883 80 [79] [79] 82 PP_4024–[PP_4025] PP_4024,[PP_4025]
* * ÷ NC_002947 4908264–4909559 4909559 1–1296 85 [79] [79] 80 [PP_4318] [PP_4318]
* * ÷ NC_002947 5033214–5033809 5035453–5034808 1000–2240 81 [79] [77] 81 PP_4437–[PP_4439] PP_4437,PP_4438,[PP_4439]
* * ÷ NC_002947 5036168–5036689 5038400–5037789 1101–2233 81 [76] [79] 82 PP_4441–[PP_4443] PP_4441,PP_4442,[PP_4443]
* * ÷ NC_002947 5222625–5223622 5224562–5223891 270–1938 81 [79] [78] 83 PP_4603 PP_4603
* * ÷ NC_002947 5307651–5308427 5310695–5309066 640–3045 82 [78] [77] 82 PP_23SG PP_23SG
* * ÷ NC_002947 5401817–5402730 5403721–5402855 126–1905 82 [79] [78] 81 [PP_4745]–PP_4746 [PP_4745],PP_4746
* * ÷ NC_002947 5453082–5453747 5454645–5454016 270–1564 82 [75] [79] 80 [PP_4791] [PP_4791]
* * ÷ NC_002947 6152986–6153594 6155197–6154694 1101–2212 82 [79] [77] 81 [PP_5396]–PP_5398 [PP_5396],PP_5397,PP_5398