| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 883865 | 32 (0.650) | 12 (0.330) | 9/192 | 3.2 | 42.1% | intergenic (+100/‑228) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator |
| ? | NC_002947 | = 883875 | 9 (0.250) | intergenic (+110/‑218) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/883693‑883865‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggcctcttcgcgggtgaacccgctcctacCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGACGCAGCGCTGCGG < NC_002947/883875‑883734 CTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTC > 1:575794/1‑150 TACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCACGCAGAGCTGCGTCAGTCGAGTATTCGCTAAGCTGTATTCAGTGAACGCCGTGTGATCCCCAGATCGCCCCGGCTCGCCGAGGCGCTTCTATTTCCTGACCCGGCCGCT > 2:218418/1‑150 TTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGG < 2:1259170/150‑1 TTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGG < 1:1295977/150‑1 TTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGG < 1:649465/150‑1 GCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGA > 1:779834/1‑150 CCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTTCACCCGCgaa < 2:401393/150‑4 CAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTTGCCCGGCCTCTTCGCGGGTGAACCCGCTCCT > 1:366336/1‑150 GCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTAC < 1:1060557/150‑1 GGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACC > 2:501808/1‑137 GGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACC < 1:501808/137‑1 CCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGACCTCTTCGCGGGTGAACCCGCTCCTCCCGCAGAACCTGGAGGAGC < 2:575794/150‑1 GCAGCGCTGCCGCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGG < 1:216725/150‑1 CAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTGCCTTGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGG < 2:746738/150‑1 GTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCC < 2:943953/148‑1 GTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCC > 1:943953/1‑148 GCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGG < 1:606089/89‑1 GCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGG > 2:606089/1‑89 GCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTAC < 2:746209/100‑1 GCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTAC > 1:746209/1‑100 CTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTTGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAAT < 2:366336/150‑1 TGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCT < 2:1108318/87‑1 TGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCT > 1:1108318/1‑87 AACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTC > 1:1068598/1‑83 AACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTC < 2:1068598/83‑1 AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGG < 2:862694/88‑1 AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGG > 1:862694/1‑88 TTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGG > 2:1142012/1‑66 TTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGG < 1:1142012/66‑1 TTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAG > 2:904325/1‑60 TTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAG < 1:904325/60‑1 TTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACATGGCGTTCAGTGATTTCAGCTTAG < 1:531303/137‑1 TTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACATGGCGTTCAGTGATTTCAGCTTAG > 2:531303/1‑137 TTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACC > 2:1015365/1‑145 TTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACC < 1:1015365/145‑1 GAACCGGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTC > 2:1292389/1‑112 GAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTC < 1:1292389/112‑1 tCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCTCCAGCAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGACGCAGCGCTGC < 2:679709/149‑1 CCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGACGCAGCGCTGC > 2:779834/1‑150 CCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTA < 1:244415/123‑1 CCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTCCAGTGATTTCAGCTTA > 2:244415/1‑123 CCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACG < 1:171685/102‑1 CCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACG > 2:171685/1‑102 CCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTG < 1:819198/91‑1 CCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTG > 2:819198/1‑91 CCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGG < 2:1095187/82‑1 CCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGG > 1:1095187/1‑82 CCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAG‑AACGCCCCGGCTCGCCGGGGCGTTtct > 2:1237699/1‑87 CCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCAGGAAATAG‑AACGCCCCGGCTCGCCGGGGCGTTtct < 1:1237699/90‑4 GCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGACGCAGCGCTGCGG > 1:610730/1‑150 GCTCCTACCGCGGAACCTGTAGGAGAAGCTGCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGACGCAGCGCTGCGa > 1:679709/1‑149 TACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTC > 1:872532/1‑110 TACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTC < 2:872532/110‑1 CTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/883693‑883865‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggcctcttcgcgggtgaacccgctcctacCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGACGCAGCGCTGCGG < NC_002947/883875‑883734 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |