| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1444956 = | NA (NA) | 17 (0.740) | 11/234 | NT | 100% | intergenic (‑331/‑328) | yveA/PP_1260 | aspartate‑proton symporter/transposase |
| ? | NC_002947 | = 1849442 | 0 (0.000) | coding (343/2754 nt) | gacS | sensor protein GacS | |||||
AAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATctcct‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1445084‑1444956‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCTGCTGGGCTGGGTAGAGATCGAGCTGTCGCACGACG < NC_002947/1849442‑1849304 AAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGC > 1:514100/1‑136 AAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCG > 1:149208/1‑136 CAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTA > 2:489910/1‑136 GCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGA > 2:19825/1‑136 TTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCA > 2:395983/1‑136 CACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGG > 1:295101/1‑136 CACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGG > 2:363770/1‑136 tttttgGCTGCGCCCCCGCGCACCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAG < 2:529561/130‑1 ATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAG > 1:393294/1‑136 ATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAG > 1:450800/1‑136 GTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCCCCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCC > 2:431836/1‑136 GTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCC > 2:126867/1‑136 TGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGC > 1:467122/1‑136 TGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGC > 1:563909/1‑136 CGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCT > 1:153577/1‑136 CGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCT > 2:443434/1‑136 cccCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCTGCTGGGCTGG < 2:478371/133‑1 GGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCTGCTGGGCTGGGTAGAGATCGAGCTG < 2:520332/136‑1 GTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCTGCTGGGCTGGGTAGAGATAGAGCTGTC < 2:149208/136‑1 ATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCTGCTGGGCTGGGTAGAGATCGAGCTGTCGCA < 1:489910/136‑1 CTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCTGCTGGGCTGGGTAGAGATCGAGCTGTCGCACGACG > 2:462492/1‑136 AAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATctcct‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1445084‑1444956‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCTGCTGGGCTGGGTAGAGATCGAGCTGTCGCACGACG < NC_002947/1849442‑1849304 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |