New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1446649	NA (NA)	11 (0.470)	10/238	NT	100%	intergenic (+37/+395)	PP_1260/ghrB	transposase/2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase
	?	NC_002947	1849440 =	0 (0.000)					coding (345/2754 nt)	gacS	sensor protein GacS

AAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAgag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1446515‑1446649 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTT  >  NC_002947/1849440‑1849561                                                                                                                                                                                                                                                                   AAGGTCTTGTGCAGTCCGAAACCACACGCCAACCCCGGCAGGTCCGGGCTTTGCTTCGCAACGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAG                                                                                                                           <  2:359044/136‑1   GGTCTTGAGGAGTTCTAAACCAGAAGCCAAGACCGGCTGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAG                                                                                                                         <  2:449147/136‑1                                                         CGCAAGCCCCGGAAACTGGGTTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTG                                                                   <  2:535621/136‑1                                                            AAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTTTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGCTTGCGCATGCTCGGGCCGGCGTGGGC                                                                >  2:111333/1‑136                                                                              TATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGG                                              >  2:563243/1‑136                                                                                               TTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTG                             >  1:27087/1‑136                                                                                               TTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTG                             <  2:418264/136‑1                                                                                                 GAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCG                           >  1:352527/1‑136                                                                                                 GAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGGCCGGGGCCAGAGACGCCCCTGCG                           >  1:160088/1‑136                                                                                                         atAAAACATTGGGTTGCTTTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTGGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATC                   <  1:660309/134‑1                                                                                                                AATGGGTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCGGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGC            <  1:99062/136‑1                                                                                                                     GTTGCATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAG       >  1:504210/1‑136                                                                                                                          ATTTTGTTTGATGAGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTT  >  1:298893/1‑136                                                                                                                                                                                                                                                                   AAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAgag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1446515‑1446649 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTT  >  NC_002947/1849440‑1849561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.