Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_002947 1,515,769 Δ33 bp 100% pseudogene (757‑789/1851 nt) PP_1325 ← putative lipoprotein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947 1515769 1515801 33 31 [0] [0] 31 PP_1325 putative lipoprotein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1515802 =0 (0.000)19 (1.210) 17/160 NT 100% pseudogene (756/1851 nt) PP_1325 putative lipoprotein
?NC_002947 = 1515768 0 (0.000)pseudogene (790/1851 nt) PP_1325 putative lipoprotein

TTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCTTCGATGGCCGCTTGCTGCTGCTCCAGGGTGCCGGCGCT  >  NC_002947/1515676‑1515936
                                                                                                                              |                                                                                                                                      
gaacacctgtaccgcaggcgctggctggccgctttgctgggcctggaagtgggcggccatgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGc                                                                                                                               <  1:489611‑M1/10‑1 (MQ=255)
           ccgcaggcgctggctggccgctttgctgggcctggaagtgggcggccatgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCtggctggc                                                                                                                    <  2:35584‑M1/21‑1 (MQ=255)
           ccgcaggcgctggctggccgctttgctgggcctggaagtgggcggccatgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCtggctggc                                                                                                                    >  2:106241‑M1/116‑136 (MQ=255)
                ggcgctggctggccgctttgctgggcctggaagtgggcggccatgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCt                                                                                                               >  2:454814‑M1/111‑136 (MQ=255)
                 gcgctggctggccgctttgctgggcctggaagtgggcggccatgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTc                                                                                                              <  2:506032‑M1/27‑1 (MQ=255)
                      ggctggccgctttgctgggcctggaagtgggcggccatgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGa                                                                                                         >  1:394803‑M1/105‑136 (MQ=255)
                      ggctggccgctttgctgggcctggaagtgggcggccatgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGa                                                                                                         >  1:577756‑M1/105‑136 (MQ=255)
                                  tgctgggccgggaagtgggcggccatgaagccagcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAggg                                                                                             >  1:440946‑M1/93‑136 (MQ=255)
                                   gctgggcctggaagtgggcggccatgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGc                                                                                            >  2:24469‑M1/92‑136 (MQ=255)
                                               agtgggcggccatgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTg                                                                                <  2:69908‑M1/57‑1 (MQ=255)
                                                    gcggccatgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTggg                                                                           >  2:664590‑M1/75‑136 (MQ=255)
                                                      ggccatgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCtggctggc                                                                                                                    <  2:614035‑M1/21‑1 (MQ=255)
                                                      ggccatgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCtggctggc                                                                                                                    >  1:614035‑M1/73‑93 (MQ=255)
                                                      ggccatgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGggcg                                                                         <  1:198163‑M1/64‑1 (MQ=255)
                                                      ggccatgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGggcg                                                                         <  2:667731‑M1/64‑1 (MQ=255)
                                                         catgaagccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCa                                                                      >  1:496048‑M1/70‑136 (MQ=255)
                                                              agccatcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGggtg                                                                 <  2:472124‑M1/72‑1 (MQ=255)
                                                                  atcgcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTcc                                                             >  1:540064‑M1/61‑136 (MQ=255)
                                                                     gcgcagggcgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCggg                                                          <  2:162954‑M1/79‑1 (MQ=255)
                                                                             cgcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGttt                                                  >  1:246973‑M1/50‑136 (MQ=255)
                                                                             cgagggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGCTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGttt                                                  <  1:324227‑M1/87‑1 (MQ=255)
                                                                              gcgggctacaccggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCGGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTg                                                 >  1:291663‑M1/49‑136 (MQ=255)
                                                                                          ggccagcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCTTCg                                     <  2:378776‑M1/100‑1 (MQ=255)
                                                                                              agcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCTTCGATgg                                 <  2:372766‑M1/104‑1 (MQ=255)
                                                                                               gcgggccttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCTTCGATGGc                                <  1:22107‑M1/105‑1 (MQ=255)
                                                                                               gcgggcctgcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTCGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCTTCGATGGc                                <  2:612186‑M1/105‑1 (MQ=255)
                                                                                                     cttcctgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCTTCGATGGCCGCTtg                          >  2:142634‑M1/26‑136 (MQ=255)
                                                                                                          tgaggcagcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCTTCGATGGCCGCTtgctgct                     <  2:590375‑M1/116‑1 (MQ=255)
                                                                                                                 gcagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCTTCGATGGCCGCTTGCTGCTGCTCCAg              <  1:198735‑M1/123‑1 (MQ=255)
                                                                                                                  cagcagggcgatCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCTTCGATGGCCGCTTGCTGCTGCTCCAgg             <  1:168463‑M1/124‑1 (MQ=255)
                                                                                                                             tCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCTTCGATGGCCGCTTGCTGCTGCTCCAGGGTGCCGGCGCt  <  2:21868‑M1/135‑1 (MQ=255)
                                                                                                                              |                                                                                                                                      
TTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCTTCGATGGCCGCTTGCTGCTGCTCCAGGGTGCCGGCGCT  >  NC_002947/1515676‑1515936

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑