| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,328,681 | G→C | 100% | M106I (ATG→ATC) | PP_4684 → | kinase‑like domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,328,681 | 0 | G | C | 100.0% | 67.1 / NA | 19 | M106I (ATG→ATC) | PP_4684 | kinase‑like domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (9/10); total (9/10) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGCACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGCACATCGACCAGATGGCCCGGCAGATTGCCGAGTTTCACCTGCAGGCCCCACGTGTGCCGATGGAG > NC_002947/5328555‑5328810 | cGAAGAATTGCGCCTGAACCAACGCCTGACCGATGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGCACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATCCGCCAGTTc < 2:490470/136‑1 (MQ=255)cGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGCACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTAAGTGCTTAAGATCCGCCAGATc > 2:393318/1‑136 (MQ=255) gcgcCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGCACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATCCGCCAGTTCCCCCAGGGc < 2:26728/136‑1 (MQ=255) gccccTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGCACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATCCGCCAGTTCCCCCAGGGc < 1:185443/133‑1 (MQ=255) cgcCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGCACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATCCGCCAGTTCCCCCAGGGcc > 2:556806/1‑136 (MQ=255) gcCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGCACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATCCGCCAGTTCCCCCAGGGCCa < 2:576516/136‑1 (MQ=255) ccTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGCACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATCCGCCAGTTCCCCCAGGGCCAGATGCTCAACAcc < 1:403589/136‑1 (MQ=255) aCCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGCACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATCCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGa > 2:13413/1‑136 (MQ=255) aGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATCCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGCACATCGACCAGATGGCCCGGCAGATTGc > 2:254117/1‑136 (MQ=255) ggTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATCCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGCACATCGACCAGATGGCCCGGCAGATTGCCGAGt > 1:561302/1‑136 (MQ=255) cGAAGGTGAAGCCATCGAGTATGTGCTGAAGATCCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGCACATCGACCAGATGGCCCGGCAGATTGCCGAGTTTCAc > 1:575001/1‑136 (MQ=255) cGAAGGTGAAGCCATCGAGTATGTGCTGAAGATCCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGCACATCGACCAGATGGCCCGGCAGATTGCCGAGTTTCAc > 2:248844/1‑136 (MQ=255) aaGGTGAAGCCATCGAGTATGTGCTGAAGATCCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGCACATCGACCAGATGGCCCGGCAGATTGCCGAGTTTCACCt < 1:490328/136‑1 (MQ=255) gTGAAGCCATCGAGTATGTGCTGAAGATCCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGCACATCGACCAGATGGCCCGGCAGATTGCCGAGTTTCACCTGCa < 1:592100/136‑1 (MQ=255) gTGAAGCCATCGAGTATGTGCTGAAGATCCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGCACATCGACCAGATGGCCCGGCAGATTGCCGAGTTTCACCTGCa < 2:575001/136‑1 (MQ=255) aaGCCATCGAGTATGTGCTGAAGATCCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGCACATCGACCAGATGGCCCGGCAGATTGCCGAGTTTCACCTGCAGGc > 1:58823/1‑136 (MQ=255) aTCGAGTATGTGCTGAAGATCCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGCACATCGACCAGATGGCCCGGCAGATTGCCGAGTTTCACCTGCAGGCCCCAc < 1:13413/136‑1 (MQ=255) tGAAGATCCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGCACATCGACCAGATGGCCCGGCAGATTGCCGAGTTTCACCTGCAGGCCCCACGTGTGCCGATGGa < 1:225511/136‑1 (MQ=255) gAAGATCCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGCACATCGACCAGATGGCCCGGCAGATTGCCGAGTTTCACCTGCAGGCCCCACGTGTGCCGATGGAg > 2:502597/1‑136 (MQ=255) | CGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGCACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGCACATCGACCAGATGGCCCGGCAGATTGCCGAGTTTCACCTGCAGGCCCCACGTGTGCCGATGGAG > NC_002947/5328555‑5328810 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |