| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,514,902 | T→G | 45.9% | L35R (CTG→CGG) | urtB → | urea ABC transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,514,902 | 0 | T | G | 45.9% | ‑2.4 / 6.6 | 24 | L35R (CTG→CGG) | urtB | urea ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base T (7/6); new base G (8/3); total (15/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.23e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCG > NC_002947/5514768‑5515030 | aaacccAACCCCGATTTCCCGGATTGCCCGCATGCACACACTCCTCCTCACCCGCCTGCTCATACACCCCCTGCCAACCCACGCCAGCGAGGGCGAATTCTTTCACCCCGCCAAGCCCGCCGCGCCGGCCGGCCTg < 2:545472/132‑1 (MQ=255) ccAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCCCGCCGGCCGGCTCg > 2:364844/1‑136 (MQ=255) tCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCCCCCCGGCCGGCCGGCGCGAAGGGGGGgcgg > 1:37788/1‑134 (MQ=255) ccGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCCGGCCGGCCTGCGCGAAGGCGGGGCAGCACAACCCGaa > 1:474357/1‑135 (MQ=255) cTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCCGGCCCGCCTGCTCGAAGGGTGGGGAGCACAACCCGAAGCcgcgc > 2:494710/1‑136 (MQ=255) cTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCCGGCCGGCCGGGGCGAAGGCTGGGCAGCCCAACCCGAAGCCGCGCGCCACCCgcagc > 1:489225/1‑136 (MQ=255) tCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCCCAACCCCAAGCCGCGCGCCGGCCgcggcg > 2:424064/1‑135 (MQ=255) ctcctGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCCGGCCGGCCGGCGCGACGGCTGGGCCGCGCAACCCCAAGCCGCGCGCCAGCCGCGGCTGGaca > 1:573612/1‑134 (MQ=255) ctcctGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCCCGCCGGCCGGCGCGAACGCGGGGCAGCCCCACCCCAAGCCGCGCCCCGGCCGCAGCGGGaaa > 1:182690/1‑136 (MQ=255) ctcctGCTGCTAATCCCCCTGCCAACCCACGCCCGCGTGGGCTAATTCTTTCTCCCCCCCACGCCCGCCGAGCAGGCGGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGaaa < 2:147691/136‑1 (MQ=255) cccctGCTCCAAACCCCCCTGCCAACCCACCCCAGCGTGGGCTAATTCTTTCCCCCCCCCCCGCCCGCCGCGCCGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGaaa < 1:146587/134‑1 (MQ=255) cctGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCGGCTCGGAGGCTGGGGCGCCCCACCCCCAGCCGCGCGCCAGCCGCGGCGGGGAAAc > 1:432969/1‑136 (MQ=255) ctcctAATCCCCCTGCCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCACGCCCGCCGAGCAGGCCGGCCGGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTgc < 1:491726/133‑1 (MQ=255) aTCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCGGCGCGGAGGCTGGGGCGCCCCACCCCCAGCCGCGCCCCGGCCGCGGCGGGGAAACCTGCGccccc > 1:147691/1‑133 (MQ=255) cctaCCCACGTCTGCTTGGGCTTATTCTTTCTAACCGCCACGCGCGCGGTGCTGGGGGGCCGGCGCGAAGTCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTTGAAAACCTGCGCCAAGGCCGCATCg < 2:19733/133‑1 (MQ=255) cAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGGAGGCCGGCCTGGGCGCACGCGGGGCCGCCCAACCCGAAGCCGCCCGCCAGCCGCGGCTGGAAAACCTGCGCCAAcgccgccacgc > 1:424582/1‑131 (MQ=255) aaCCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGGCGGGCGGCCGGGGCGCCGGCAGGGGCGCCCAACCCCCTGCCCCCCCCCGGCCCCGGCGGGGAAACCAGCGCCCAcgccgccgagcc > 2:560473/1‑130 (MQ=255) gctaGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCAGGAAAACCTGCGCCAAGGCCGCCTCGCCCCCaaat > 2:449349/4‑134 (MQ=255) gCCAGCGTGGGCTAATTCTTTCACCCCGCCACGCCCGCCGAGCAGGCGGGCCTGCGCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATg < 2:51104/136‑1 (MQ=255) gtgggAGAATTCTTTCTCCCCCCCAGGCCCGCCGTGCAGGCCGGCGGGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAgc < 1:70895/134‑1 (MQ=255) cACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCCCCAGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCAGaac > 1:174085/1‑136 (MQ=255) cgCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCt < 2:489225/135‑1 (MQ=255) gAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCCAAGCCGCGCGCCTGCCGCTGCTGGATAAACTGCGCCCAGGCCGCATCGCCCCCACTGACAAGCGCAAGGTGCGCCGGCACCACCCCCAGCCCGGcc > 1:98417/1‑136 (MQ=255) gccggccTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCg < 1:449349/136‑1 (MQ=255) | GAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGAAGGCTGGGCAGCACAACCCGATGCCGCGCGCCTGCCGCTGCTGGAAAACCTGCGCCAAGGCCGCATCGCCACCAATGACAAGCGCAAGGTGCGCCTGAACAACCGCCTGCGCGGCCTGATCG > NC_002947/5514768‑5515030 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |