| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 898,346 | T→A | 16.0% | V76D (GTC→GAC) | PP_0781 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 898,346 | 0 | T | A | 16.0% | 60.6 / 5.1 | 25 | V76D (GTC→GAC) | PP_0781 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (13/8); new base A (2/2); total (15/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCAGTTCCGCACCAGCCTCAATGAAGAAGTCGCCTCGCTGGGCCTCAACCTGCGCCGGATCGACGCTGTGCGCTCAGCCTTCTACCAGGCTGAATGGCAGACGGCGCACATGCTACGCCAGCGCTTCGTCGACCTCGACATCAACAGCATCGTCGACGAACTGCTGAGGGTCGTGCAGCAGATGGCGATGATCGTCGTCGGCAGCACCGTTACCGGTGGCCTGCTTGGCGCGGGGTAGGCGCATTCGCCGGCGGCGCCGG > NC_002947/898218‑898477 | ccAGTTCCGCACCAGCCTCAATGAAGAAGTCGCCTCGCTGGGCCTCAACCTGCGCCGGATCGACGCTGTGCGCTCAGCCTTCTACCAGGCTGAATGGCAGACGGCGCACATGCTACGCCAGCGCTTCGTCGACCTc < 1:433665/136‑1 (MQ=255)ccAGTTCCGCACCAGCCTCAATGAAGAAGTCGCCTCGCTGGGCCTCAACCTGCGCCGGATCGACGCTGTGCGCTCAGCCTTCTACCAGGCTGAATGGCAGACGGCGCACATGCTACGCCAGCGCTTCGTCGACCTc < 1:2969/136‑1 (MQ=255) aGTTCCGCACCAGCCTCAATGAAGAAGTCGCCTCGCTGGGCCTCAACCTGCGCCGGATCGACGCTGTGCGCTCAGCCTTCTACCAGGCTGAATGGCAGACGGCGCACATGCTACGCCAGCGCTTCGTCGACCTCGa > 1:542003/1‑136 (MQ=255) aGTTCCGCACCAGCCTCAATGAAGAAGTCGCCTCGCTGGGCCTCAACCTGCGCCGGATCGACGCTGTGCGCTCAGCCTTCTACCAGGCTGAATGGCAGACGGCGCACATGCTACGCAAGCGCTTCGTCGACCTCGa > 2:491813/1‑136 (MQ=255) cAGCCTCAATGAAGAAGTCGCCTCGCTGGGCCTCAACCTGCGCCGGATCGACGCTGTGCGCTCAGCCTTCTACCAGGCTGAATGGCAGACGGCGCACATGCTACGCCAGCGCTTCGTCGACCTCGACATCAACAGc > 1:297893/1‑136 (MQ=255) tCAATGAAGAAGTCGCCTCGCTGGGCCTCAACCTGCGCCGGATCGACGCTGTGCGCTCAGCCTTCTACCAGGCTGAATGGCAGACGGCGCACATGCTACGCCAGCGCTTCGTCGACCTCGACATCAACAGCAtcgt > 1:573113/1‑136 (MQ=255) aaTGAAGAAGTCGCCTCGCTGGGCCTCAACCTGCGCCGGATCGACGCTGTGCGCTCAGCCTTCTACCAGGCTGAATGGCAGACGGCGCACATGCTACGCCAGCGCTTCGTCGACCTCGACATCAACAGCAtcgtcg < 2:542003/136‑1 (MQ=255) ccTCGCTGGGCCTCAACCTGCGCCGGATCGACGCTGTGCGCTCAGCCTTCTACCAGGCTGAATGGCAGACGGCGCACATGCTACGCCAGCGCTTCGTCGACCTCGACATCAACAGCATCGTCGACGAACTGCTGAg > 1:18753/1‑136 (MQ=255) tCGCTGGGCCTCAACCTGCGCCGGATCGACGCTGTGCGCTCAGCCTTCTACCAGGCTGAATGGCAGACGGCGCACATGCTACGCCAGCGCTTCGTCGACCTCGACATCAACAGCATCGTCGACGAACTGCTGAggg > 1:619957/1‑136 (MQ=255) cGCTGGGCCTCAACCTGCGCCGGATCGACGCTGTGCGCTCAGCCTTCTACCAGGCTGAATGGCAGACGGCGCACATGCTACGCCAGCGCTTCGTCGACCTCGACATCAACAGCATCGTCGACGAACTGCTGAGGGt < 1:111328/136‑1 (MQ=255) gggCCTCAACCTGCGCCGGATCGACGCTGTGCGCTCAGCCTTCTACCAGGCTGAATGGCAGACGGCGCACATGCTACGCCAGCGCTTCGTCGACCTCGACATCAACAGCATCGTCGACGAACTGCTGAGGGTCGTg > 2:450807/1‑136 (MQ=255) tCGACGCTGTGCGCGCAGCCTTCTACCAGGCTGAATGGCAGACGGCGCACATGCTACGCCAGCGCTTCGTCGACCTCGACATCAACAGCATCGTCGACGAACTGCTGAGGGTCGTGCAGCAGATGGCGATGAtcgt < 1:453153/136‑1 (MQ=255) gcTCAGCCTTCTACCAGGCTGAATGGCAGACGGCGCACATGCTACGCCAGCGCTTCGTCGACCTCGACATCAACAGCATCGTCGACGAACTGCTGAGGGTCGTGCAGCAGATGGCGATGATCGTCGTCGGCAGCAc > 1:593194/1‑136 (MQ=255) gCCTTCTACCAGGCTGAATGGCAGACGGCGCACATGCTACGCCAGCGCTTCGACGACCTCGACATCAACAGCATCGTCGACGAACTGCTGAGGGTCGTGCAGCAGATGGCGATGATCGTCGTCGGCAGCACCGTTa > 1:244983/1‑136 (MQ=255) gCCTTCTACCAGGCTGAATGGCAGACGGCGCACATGCTACGCCAGCGCTTCGACGACCTCGACATCAACAGCATCGTCGACGAACTGCTGAGGGTCGTGCAGCAGATGGCGATGATCGTCGTCGGCAGCACCGTTa > 1:241885/1‑136 (MQ=255) cTTCTACCAGGCTGAATGGCAGACGGCGCACATGCTACGCCAGCGCTTCGTCGACCTCGACATCAACAGCATCGTCGACGAACTGCTGAGGGTCGTGCAGCAGATGGCGATGATCGTCGTCGGCAGCACCGTTAcc > 2:64696/1‑136 (MQ=255) cTACCAGGCTGAATGGCAGACGGCGCACATGCTACGCCAGCGCTTCGTCGACCTCGACATCAACAGCATCGTcgac < 1:25950/76‑1 (MQ=255) cTACCAGGCTGAATGGCAGACGGCGCACATGCTACGCCAGCGCTTCGTCGACCTCGACATCAACAGCATCGTcgac > 2:25950/1‑76 (MQ=255) tGAATGGCAGACGGCGCACATGCTACGCCAGCGCTTCGTCGACCTCGACATCAACAGCATCGTCGACGAACTGCTGAGGGTCGTGCAGCAGATGGCGATGATCGTCGTCGGCAGCACCGTTACCGGTGGCCTGCtt > 1:224935/1‑136 (MQ=255) gAATGGCAGACGGCGCACATGCTACGCAAGCGCTTCGTCGACCTCGACATCAACAGCATCGTCGACGAACTGCTGAGGGTCGTGCAGCAGATGGCGATGATCGTCGTCGGCAGCACCGTTACCGGTGGCCTGCTTg < 1:491813/136‑1 (MQ=255) aTGGCAGACGGCGCACATGCTACGCCAGCGCTTCGACGACCTCGACATCAACAGCATCGTCGACGAACTGCTGAGGGTCGTGCAGCAGATGGCGATGATCGTCGTCGGCAGCACCGTTACCGGTGGCCTGCTTGgc < 2:244983/136‑1 (MQ=255) aTGGCAGACGGCGCACATGCTACGCCAGCGCTTCGACGACCTCGACATCAACAGCATCGTCGACGAACTGCTGAGGGTCGTGCAGCAGATGGCGATGATCGTCGTCGGCAGCACCGTTACCGGTGGCCTGCTTGgc < 2:241885/136‑1 (MQ=255) aGCGCTTCGTCGACCTCGACATCAACAGCATCGTCGACGAACTGCTGAGGGTCGTGCAGCAGATGGCGATGATCGTCGTCGGCAGCACCGTTACCGGTGGCCTGCTTGGCGCGGGGTAGGCGCATTCGCCggcggc < 2:18753/136‑1 (MQ=255) ttCGTCGACCTCGACATCAACAGCATCGTCGACGAACTGCTGAGGGTCGTGCAGCAGATGGCGATGATCGTCGTCGGCAGCACCGTTACCGGTGGCCTGCTTGGCGCGGGGTAGGCGCATTCGCCGGCGGCGCCgg > 2:327541/1‑136 (MQ=255) ttCGTCGACCTCGACATCAACAGCATCGTCGACGAACTGCTGAGGGTCGTGCAGCAGATGGCGATGATCGTCGTCGGCAGCACCGTTACCGGTGGCCTGCTTGGCGCGGGGTAGGCGCATTCGCCGGCGGCGCCgg > 1:369951/1‑136 (MQ=255) | CCAGTTCCGCACCAGCCTCAATGAAGAAGTCGCCTCGCTGGGCCTCAACCTGCGCCGGATCGACGCTGTGCGCTCAGCCTTCTACCAGGCTGAATGGCAGACGGCGCACATGCTACGCCAGCGCTTCGTCGACCTCGACATCAACAGCATCGTCGACGAACTGCTGAGGGTCGTGCAGCAGATGGCGATGATCGTCGTCGGCAGCACCGTTACCGGTGGCCTGCTTGGCGCGGGGTAGGCGCATTCGCCGGCGGCGCCGG > NC_002947/898218‑898477 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |