| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,049,684 | G→T | 19.0% | R147L (CGG→CTG) | PP_0904 → | protein InaA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,049,684 | 0 | G | T | 19.0% | 56.7 / 2.8 | 21 | R147L (CGG→CTG) | PP_0904 | protein InaA |
| Reads supporting (aligned to +/- strand): ref base G (7/10); new base T (2/2); total (9/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCGCTGCTGGTCAGCGAAGCGCTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGC > NC_002947/1049553‑1049817 | cgcgcTGCTGGTCAGCGAAGCGCTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATg > 1:546920/1‑136 (MQ=255) gTCAGCGAAGCGCTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGTAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGc < 1:331481/136‑1 (MQ=255) gCGAAGCGCTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTg < 2:438144/136‑1 (MQ=255) cTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATtc > 2:452081/1‑136 (MQ=255) aTGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCaa > 2:665420/1‑136 (MQ=255) gAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCTGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCg > 2:168890/1‑136 (MQ=255) gAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCTGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCg > 2:165492/1‑136 (MQ=255) ttACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAg < 1:334447/136‑1 (MQ=255) gtggtgCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCg > 1:109348/1‑136 (MQ=255) tGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCTGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGgcg < 1:165492/136‑1 (MQ=255) tGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCTGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGgcg < 1:168890/136‑1 (MQ=255) aGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCgct < 1:206626/136‑1 (MQ=255) gcgcATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCgctg > 1:472484/1‑136 (MQ=255) aTGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTgg < 1:651072/136‑1 (MQ=255) gCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGAc > 1:9360/1‑136 (MQ=255) cAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTg < 1:452081/136‑1 (MQ=255) ccTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAg < 1:242332/136‑1 (MQ=255) cTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGt < 1:94513/136‑1 (MQ=255) cTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGt < 1:46293/136‑1 (MQ=255) cTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGt < 1:216017/136‑1 (MQ=255) ggACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAgg > 2:172886/1‑136 (MQ=255) gcgGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGc > 2:374403/1‑136 (MQ=255) | CGCGCTGCTGGTCAGCGAAGCGCTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGC > NC_002947/1049553‑1049817 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |