Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,316,584 | G→T | 8.7% | intergenic (+32/+4) | PP_2033 → / ← PP_2034 | hypothetical protein/membrane protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,316,584 | 0 | G | T | 8.7% | 156.8 / 2.5 | 46 | intergenic (+32/+4) | PP_2033/PP_2034 | hypothetical protein/membrane protein |
Reads supporting (aligned to +/- strand): ref base G (24/18); new base T (2/2); total (26/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.16e-01 |
GCCCTGAAGGGCTTGCGCAACAGTGTGCTTGATGTGCTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCGTTGGGCAGGCGCTG > NC_002947/2316457‑2316716 | gCCCTGAAGGGCTTGCGCAACAGTGTGCTTGATGTGCTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACa < 1:372143/136‑1 (MQ=255) tGAAGGGCTTGCGCAACAGTGTGCTTGATGTGCTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGgc > 1:66245/1‑136 (MQ=255) gAAGGGCTTGCGCAACAGTGTGCTTGATGTGCTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGgcg < 1:410703/136‑1 (MQ=255) gtgcAACAGTGTGCTTGATGTGCTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTGGTACCGGGCCTACAGGGCGCGCGCCAGc > 2:428015/3‑136 (MQ=255) gcgcAACAGTGTGCTTGATGTGCTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGc > 1:146833/1‑136 (MQ=255) gcgcAACAGTGTGCTTGATGTGCTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGc > 1:187310/1‑136 (MQ=255) gcgcAACAGTGTGCTTGATGTGCTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGc > 2:557400/1‑136 (MQ=255) gcgcAACAGTGTGCTTGATGTGCTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGc > 1:366546/1‑136 (MQ=255) gcgcAACAGTGTGCTTGATGTGCTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGc > 1:414408/1‑136 (MQ=255) cgcAACAGTGTGCTTGATGTGCTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCt > 2:363342/1‑136 (MQ=255) cgcAACAGTCAGCTTGATGTGCTGTTCGTCAATCGGCCTTGGGCAGCCGGGCGCGTGGTGAAATCCAACCCGGCGCAATGAATGACTGATCATCGCCGGGCAATGTTTTACCGGGCCTACAGGGCGCGCCCCAGcg > 2:617766/1‑135 (MQ=255) tgtgCTTGATGTGCTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTc < 1:272351/136‑1 (MQ=255) tgtgCTTGATGTGCTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTc > 1:70205/1‑136 (MQ=255) ggtgCTGGATGTGCTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTc < 2:668789/135‑1 (MQ=255) ttGATGTGCTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTcgcgcg > 2:117381/1‑136 (MQ=255) ttGATGTGCTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTcgcgcg > 1:290286/1‑136 (MQ=255) ttGATGTGCTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTcgcgcg > 1:468812/1‑136 (MQ=255) gtgCTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTc < 1:142819/136‑1 (MQ=255) gtgCTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTGGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTc < 1:428015/136‑1 (MQ=255) cTGTTCGTCAATCGGCCGGGGGCAGGCGGTCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCTGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTgg > 1:64975/1‑136 (MQ=255) cTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCTGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTgg > 1:228397/1‑136 (MQ=255) cTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGTGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTgg > 1:629913/1‑136 (MQ=255) cTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTgg < 1:637655/136‑1 (MQ=255) cTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTgg > 2:44766/1‑136 (MQ=255) aTCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACAt < 1:654492/136‑1 (MQ=255) gCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTcc > 2:225509/1‑136 (MQ=255) gCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTcc > 2:32624/1‑136 (MQ=255) gCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTcc > 2:26523/1‑136 (MQ=255) ggggCAGGCGGTCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCTGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACTTCTCCtgtg < 2:64975/136‑1 (MQ=255) ggggCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCTGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCtgtg < 2:228397/136‑1 (MQ=255) ggggCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCtgtg < 1:363342/136‑1 (MQ=255) ggCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGcc < 1:117381/136‑1 (MQ=255) gcgggcgCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGt < 2:151661/136‑1 (MQ=255) gggcgCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTca < 2:603143/136‑1 (MQ=255) gtggtgCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAgcagca > 2:508861/1‑136 (MQ=255) tGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTcagc < 1:295144/136‑1 (MQ=255) aCCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCAt < 1:44766/136‑1 (MQ=255) ggCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCtgt > 2:437412/1‑103 (MQ=255) ggCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCtgt < 1:437412/103‑1 (MQ=255) aatgaatgACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAAcaccac > 2:630802/1‑136 (MQ=255) aCTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGcga < 2:414408/136‑1 (MQ=255) tggcctggcAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATc < 1:617766/136‑1 (MQ=255) tggcAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCGtt > 1:349024/1‑136 (MQ=255) aaTGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCGTTGGGc > 2:2629/1‑136 (MQ=255) aaTGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCGTTGGGc > 2:70551/1‑136 (MQ=255) aCCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCGTTGGGCAGGCGCTg < 2:468812/136‑1 (MQ=255) | GCCCTGAAGGGCTTGCGCAACAGTGTGCTTGATGTGCTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCGTTGGGCAGGCGCTG > NC_002947/2316457‑2316716 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |