| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,633,849 | C→T | 100% | H173H (CAC→CAT) | clpP → | ATP‑dependent Clp protease proteolytic subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,633,849 | 0 | C | T | 100.0% | 32.7 / NA | 12 | H173H (CAC→CAT) | clpP | ATP‑dependent Clp protease proteolytic subunit |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (5/7); total (5/7) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CCTGCCTAACTCGCGCGTGATGATCCACCAGCCGCTGGGCGGCTTCCAGGGTCAGGCCACCGATATCGAGATCCACGCCCAGGAAATTCTCAATATCAAGGCCCGTCTGAACGAGCTGCTGGCCTATCACACCGGCCAGGACCTCGAGACCATCAAGCGTGACACCGAGCGTGACAACTTCATGAGCGCCTCGCGCGCAGCCGAGTACGGCCTGATCGACTCGGTCTACGACAAGCGGCAACTGGCCTCCTGAACCGGGG > NC_002947/2633720‑2633979 | cctgcctAACTCGCGCGTGATGATCCACCAGCCGCTGGGCGGCTTCCAGGGTCAGGCCACCGATATCGAGATCCACGCCCAGGAAATTCTCAATATCAAGGCCCGTCTGAACGAGCTGCTGGCCTATCATACCGGc < 1:533055/136‑1 (MQ=255)cctgcctAACTCGCGCGTGATGATCCACCAGCCGCTGGGCGGCTTCCAGGGTCAGGCCACCGATATCGAGATCCACGCCCAGGAAATTCTCAATATCAAGGCCCGTCTGAACGAGCTGCTGGCCTATCATACCGGc < 2:526227/136‑1 (MQ=255) ctAACTCGCGCGTGATGATCCACCAGCCGCTGGGCGGCTTCCAGGGTCAGGCCACCGATATCGAGATCCACGCCCAGGAAATTCTCAATATCAAGGCCCGTCTGAACGAGCTGCTGGCCTATCATACCGGCCAGGa < 2:523593/136‑1 (MQ=255) cgTGATGATCCACCAGCCGCTGGGCGGCTTCCAGGGTCAGGCCACCGATATCGAGATCCACGCCCAGGAAATTCTCAATATCAAGGCCCGTCTGAACGAGCTGCTGGCCTATCATACCGGCCAGGACCTCGAGAcc < 1:483123/136‑1 (MQ=255) tgatgaTCCACCAGCCGCTGGGCGGCTTCCAGGGTCAGGCCACCGATATCGAGATCCACGCCCAGGAAATTCTCAATATCAAGGCCCGTCTGAACGAGCTGCTGGCCTATCATACCGGCCAGGACCTCGAGACCaa > 1:481034/1‑135 (MQ=255) tGGGCGGCTTCCAGGGTCAGGCCACCGATATCGAGATCCACGCCCAGGAAATTCTCAATATCAAGGCCCGTCTGAACGAGCTGCTGGCCTATCATACCGGCCAGGACCTCGAGACCATCAAGCGTGACACCGAGCg < 2:36193/136‑1 (MQ=255) gggCGGCTTCCAGGGTCAGGCCACCGATATCGAGATCCACGCCCAGGAAATTCTCAATATCAAGGCCCGTCTGAACGAGCTGCTGGCCTATCATACCGGCCAGGACCTCGAGACCATCAAGCGTGACACCGAGCGt < 1:543807/136‑1 (MQ=255) ccAGGAAATTCTCAATATCAAGGCCCGTCTGAACGAGCTGCTGGCCTATCATACCGGCCAGGACCTCGAGACCATCAAGCGTGACACCGAGCGTGACAACTTCATGAGCGCCTCGCGCGCAGCCGAGTACGGCCTg > 1:192787/1‑136 (MQ=255) ccAGGAAATTCTCAATATCAAGGCCCGTCTGAACGAGCTGCTGGCCTATCATACCGGCCAGGACCTCGAGACCATCAAGCGTGACACCGAGCGTGACAACTTCATGAGCGCCTCGCGCGCAGCCGAGTACGGCCTg > 1:411252/1‑136 (MQ=255) ccAGGAAATTCTCAATATCAAGGCCCGTCTGAACGAGCTGCTGGCCTATCATACCGGCCAGGACCTCGAGACCATCAAGCGTGACACCGAGCGTGACAACTTCATGAGCGCCTCGCGCGCAGCCGAGTACGGCCTg > 1:418748/1‑136 (MQ=255) gAACGAGCTGCTGGCCTATCATACCGGCCAGGACCTCGAGACCATCAAGCGTGACACCGAGCGTGACAACTTCATGAGCGCCTCGCGCGCAGCCGAGTACGGCCTGATCGACTCGGTCTACGACAAGCGGCAACTg > 1:289044/1‑136 (MQ=255) tATCATACCGGCCAGGACCTCGAGACCATCAAGCGTGACACCGAGCGTGACAACTTCATGAGCGCCTCGCGCGCAGCCGAGTACGGCCTGATCGACTCGGTCTACGACAAGCGGCAACTGGCCTCCTGAACCgggg < 1:52623/136‑1 (MQ=255) | CCTGCCTAACTCGCGCGTGATGATCCACCAGCCGCTGGGCGGCTTCCAGGGTCAGGCCACCGATATCGAGATCCACGCCCAGGAAATTCTCAATATCAAGGCCCGTCTGAACGAGCTGCTGGCCTATCACACCGGCCAGGACCTCGAGACCATCAAGCGTGACACCGAGCGTGACAACTTCATGAGCGCCTCGCGCGCAGCCGAGTACGGCCTGATCGACTCGGTCTACGACAAGCGGCAACTGGCCTCCTGAACCGGGG > NC_002947/2633720‑2633979 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |