New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1849440 =	0 (0.000)	11 (0.820)	9/258	0.3	100%	coding (345/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	2942681 =	NA (NA)					intergenic (+46/+37)	PP_2569/PP_2570	MHS family metabolite MFS transporter/transposase

GAGAGAATTGCCGCACAAACCCTGGAGCAGGCCGATGTGCGCGCAGTGGCGTTTCTGGCCCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1849577‑1849440 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCG  >  NC_002947/2942681‑2942780                                                                                                                                                                                                                                                GAGAGAATTGACGCACAAACCCTGGAGCAGGCCGATGTGCGCGCAGTGGCGATTCAGGCACCCGACCGCACGCGACAGGCCCACCCCGGCCCGCGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCCCCCAAC                                                                                                        >  1:51091/1‑136    AGAATTGCCGCACAAACCCTGGAGCAGGCCGATGTGCGCGCAGTGGCGTTTCTGGCCCCGGACCGCACGCGCCTGGCCCTCGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCT                                                                                                     <  2:343040/136‑1    AGAATTGCCGCACAAACCCTGGAGCAGGCCGATGTGCGCGCAGTGGCGTTTCTGGCCCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCT                                                                                                     <  2:317815/136‑1      AATTGCCGCACAAACCCTGGAGCAGGCCGATGTGCGCGCAGTGGCGTTTCTGGCCCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCA                                                                                                   >  2:270179/1‑136                               GCCGATGTGCGCGCAGTGGCGTTTCTGGCCCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAATGCAACCCATTGTTT                                                                          <  1:31939/136‑1                                CCGATGTGCGCGCAGTGGCGTTTCTGGCCCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAATGCAACCCATTGTTTT                                                                         <  1:236885/136‑1                                  GATGTGCGCGCAGTGGCGTTTCTGGCCCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCCCCTCTCATCAAACAAAATGCAACCCATTGGTTTCT                                                                       >  2:183676/1‑136                                  GATGTGCGCGCAGTGGCGTTTCTGGCCCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAATGCAACCCATTGTTTTCT                                                                       >  1:218681/1‑136                                                          GCCCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTG                                               <  2:233528/136‑1                                                                        GCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCC                                 >  1:17634/1‑136                                                                                  CACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCGTTGgg                       >  1:279262/1‑134                                                                                                       AATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGGGTTTCGAATAAAAACCCCGACCatccg  >  2:76889/1‑131                                                                                                                                                                                                                                                GAGAGAATTGCCGCACAAACCCTGGAGCAGGCCGATGTGCGCGCAGTGGCGTTTCTGGCCCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1849577‑1849440 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCG  >  NC_002947/2942681‑2942780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.