New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1444956 =	NA (NA)	4 (0.300)	4/254	0.7	100%	intergenic (‑331/‑328)	yveA/PP_1260	aspartate‑proton symporter/transposase
	?	NC_002947	= 1849442	0 (0.000)					coding (343/2754 nt)	gacS	sensor protein GacS

CAGCCCAGCAGGCGCTCGGCTTCGGCCGGCACGGCGTCGGTGGCCAGGTCGCGGTGGTGGCCGAAAACTGGCATCAGGTAGCGGGTGGCGTCGTTGCCACTGCGCTGCAGGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTC  >  NC_002947/1849330‑1849577                                                                                                                 |                                                                                                                                        cagcccagcAGGCGCTCGGCTTCGGCCGGCACGGCGTCGGTGGCCAGGTCGCGGTGGTGGCCGAAAACTGGCATCAGGTAGCGGGTGGCGTCGTTGCCACTGCGCTGCAGGAGatcacccagcccttccggggggg                                                                                                                  <  2:345562‑M2/136‑24 (MQ=255)       agcagGCGCTCGGCTTCGGCCGGCACGGCGTCGGTGGCCAGGTCGCGGTGGTGGCCGAAAACTGGCATCAGGTAGCGGGTGGCGTCGTTGCCACTGCGCTGCAGGAGatcacccagcccttccgggcggcggggtg                                                                                                            <  2:141881‑M2/136‑30 (MQ=255)           cggatggtcggggtttttattcgaaacccccggaaactggggtatcaactggtggccgcttgagtgcttagaaaacaatgggttgcattttgtttgatgaGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGAtt                                                                                                        >  2:76889‑M1/101‑136 (MQ=255)                                cccaacgcccggaaactggggtatcaactggtggccgcttgagtgcttagaaaacaatgggttgcattttgtttgatgaGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTg                                                                                   >  1:279262‑M1/80‑136 (MQ=255)                                          ggaaactggggtatcaactggtggccgcttgagtgcttagaaaacaatgggttgcattttgtttgatgaGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGgcgc                                                                         >  1:17634‑M1/70‑136 (MQ=255)                                                        caactggtggccgcttgagtgcttagaaaacaatgggttgcattttgtttgatgaGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGc                                                           <  2:233528‑M1/81‑1 (MQ=255)                                                                   aCTGGCATCAGGTAGCGGGTGGCGTCGTTGCCACTGCGCTGCAGGAGatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaag                                                >  1:209558‑M2/1‑47 (MQ=255)                                                                                agaaaccaatgggttgcattttgtttgatgaGAGGGGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATc                                   >  2:183676‑M1/32‑136 (MQ=255)                                                                                agaaaacaatgggttgcattttgtttgatgaGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATc                                   >  1:218681‑M1/32‑136 (MQ=255)                                                                                  aaaacaatgggttgcattttgtttgatgaGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCgg                                 <  1:236885‑M1/107‑1 (MQ=255)                                                                                   aaacaatgggttgcattttgtttgatgaGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGc                                <  1:31939‑M1/108‑1 (MQ=255)                                                                                                           gCAGGAGatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagaaaaggcggttggcccggtagggccagccgccttttgctt        >  1:250707‑M2/1‑7 (MQ=255)                                                                                                            tgaGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAAtt       >  2:270179‑M1/4‑136 (MQ=255)                                                                                                             tggaGagcacccagcccttccgggctgcgctgtcgcgcagaaaacatgtggggtacggcttcagttccgccgcgacgctgacattttgaaaaagaaacggcggttggcccggtcgggccagccgccttttgctttg      >  1:44204‑M2/2‑5 (MQ=255)                                                                                                             aGGAGatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagaaaaggcggttggcccggtagggccagccgccttttgctttg      >  1:22048‑M2/1‑5 (MQ=255)                                                                                                              aGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATtct     <  2:317815‑M1/135‑1 (MQ=255)                                                                                                              aGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGAGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATtct     <  2:343040‑M1/135‑1 (MQ=255)                                                                                                                 GTTGGGGGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCGCGGGCCGGGGTGGGCCTGTCGCGTGCGGTCGGGTGCCTGAATCGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGTCAATtctctc  >  1:51091‑M1/1‑136 (MQ=255)                                                                                                                 |                                                                                                                                        CAGCCCAGCAGGCGCTCGGCTTCGGCCGGCACGGCGTCGGTGGCCAGGTCGCGGTGGTGGCCGAAAACTGGCATCAGGTAGCGGGTGGCGTCGTTGCCACTGCGCTGCAGGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTC  >  NC_002947/1849330‑1849577

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.