Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	3352965	3353003	39	3 [1]	[1] 2	PP_2944	sensor histidine kinase

CTCAAGCAACAGGATGCTGTATGGGAAAACGAGGTGCTCAAGGCCCGGGTAGCCGTCTCCCATAACTACGATCCACTTGTGATCCCTCTCAAGGAGATGAAGCGGCTATGGGCACGATTCGACCGCCGGGAAGCCGAGC  >  NC_002947/3352829‑3352967                                                                                                                                        |    cTCAAGCAACAGGATGCTGTATGGGAAAACGAGGTGCTCAAGGCCCGGGTAGCCGTCTCCCATAACTACGATCCACTTGTGATCCCTCTCAAGGAGATGAAGCGGCTATGGGCACGATTCGACCGCCGGGAAGCCg     <  2:206936/136‑1 (MQ=255) cTCAAGCAACAGGATGCTGTATGGGAAAACGAGGTGCTCAAGGCCCGGGTAGCCGTCTCCCATAACTACGATCCACTTGTGATCCCTCTCAAGGAGATGAAGCGGCTATGGGCACGATTCGACCGCCGGGAAGCCg     <  2:302325/136‑1 (MQ=255)    aaGCAACAGGATGCTGTATGGGAAAACGAGGTGCTCAAGGCCCGGGTAGCCGTCTCCCATAACTACGATCCACTTGTGATCCCTCTCAAGGAGATGAAGCGGCTATGGGCACGATTCGACCGCCGGGAAGCCGAGc  >  2:300931/1‑136 (MQ=255)                                                                                                                                        |    CTCAAGCAACAGGATGCTGTATGGGAAAACGAGGTGCTCAAGGCCCGGGTAGCCGTCTCCCATAACTACGATCCACTTGTGATCCCTCTCAAGGAGATGAAGCGGCTATGGGCACGATTCGACCGCCGGGAAGCCGAGC  >  NC_002947/3352829‑3352967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑