Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	3353871	3353987	117	3 [1]	[1] 2	PP_2944	sensor histidine kinase

GAACACATCCTCTGATCTCATCGCTCGAACGTTGCGCAGCAGCAAAACCCAGGGTTTGGGCAAGGCCATGCAACTGTTCCGCGAGCATGCCACTGACATCGGTCGGTTTCTCGACGAGGATCCCCGAGGCCGGTTGCTTCCCGGCTACCT  >  NC_002947/3353743‑3353892                                                                                                                                |                       gAACACATCCTCTGATCTCATCGCTCGAACGTTGCGCAGCAGCAAAACCCAGGGTTTGGGCAAGGCCATGCAACTGTTCCGCGAGCATGCCACTGACATCGGTCGGTTTCTCGACGAGGATCCCCGAg                        <  1:284053/128‑1 (MQ=255) gAACACATCCTCTGATCTCATCGCTCGAACGTTGCGCAGCAGCAAAACCCAGGGTTTGGGCAAGGCCATGCAACTGTTCCGCGAGCATGCCACTGACATCGGTCGGTTTCTCGACGAGGATCCCCGAg                        >  2:284053/1‑128 (MQ=255)               aTCTCATCGCTCGAACGTTGCGCAGCAGCAAAACCCAGGGTTTGGGCAAGGCCATGCACCTGTTCCGCGAGCATGCCCCTGCCATCGGTCGGTTTCTCGCCGAGGCTCCCCGAGGCCGGTTGCGTCCCGCCTACCt  >  2:181093/1‑136 (MQ=255)                                                                                                                                |                       GAACACATCCTCTGATCTCATCGCTCGAACGTTGCGCAGCAGCAAAACCCAGGGTTTGGGCAAGGCCATGCAACTGTTCCGCGAGCATGCCACTGACATCGGTCGGTTTCTCGACGAGGATCCCCGAGGCCGGTTGCTTCCCGGCTACCT  >  NC_002947/3353743‑3353892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑