Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	4974807	4974841	35	2 [1]	[1] 3	fliC	flagellin

ACGCTGGCTTGCAGGGTAGCAACACCGCCGGCAACGCTGGCTTCGTTGTAGTTGCCCTTCATCGAGGTAGCGCTGACATCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATC  >  NC_002947/4974671‑4974822                                                                                                                                        |                 aCGCTGGCTTGCAGGGTAGCAACACCGCCGGCAACGCTGGCTTCGTTGTAGTTGCCCTTCATCGAGGTAGCGCTGACATCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCtgctgc                  >  2:265119/1‑136 (MQ=255)                 tAGCAACACCGCCGGCAACGCTGGCTTCGTTGTAGTTGCCCTTCATCGAGGTAGCGCTGACATCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATc  <  1:339695/136‑1 (MQ=255)                                                                                                                                        |                 ACGCTGGCTTGCAGGGTAGCAACACCGCCGGCAACGCTGGCTTCGTTGTAGTTGCCCTTCATCGAGGTAGCGCTGACATCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATC  >  NC_002947/4974671‑4974822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑