Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	2228104	2228216	113	2 [1]	[1] 2	PP_1962	site‑specific recombinase

CATCTCATAGGAATGGTGGCCGAACAGCAGACGGATCAGGTCAATATTTCGTTCGCTCCGATTGATCAGGATTTCTGCAATCGTTTTCCGAAAGCGATGCGGATGGAGGCGCTCGATCCCCGTCACTTCTTCGAGATAATCAATGA  >  NC_002947/2228207‑2228352           |                                                                                                                                        cATCTCATAGGAATGGTGGCCGACCAGCAGACGGATCAGGTCAATATTTCGTTCGCTCCGATTGATCAGGATTTCTGCAATCGTTTTCCGAAAGCGATGCGGATGGAGGCGCTCGATCCCCGTCACTTCTTCgaga            >  2:298532/1‑136 (MQ=255)           gAATGGTGGCCGAACAGCAGACGGATCAGGTCAATATTTCGTTCGCTCCGATTGATCAGGATTTCTGCAATCGTTTTCCGAAAGCGATGCGGATGGAGGCGCTCGATCCCCGTCACTTCTTCGAGATAATCAATGa  >  2:268981/1‑136 (MQ=255)           |                                                                                                                                        CATCTCATAGGAATGGTGGCCGAACAGCAGACGGATCAGGTCAATATTTCGTTCGCTCCGATTGATCAGGATTTCTGCAATCGTTTTCCGAAAGCGATGCGGATGGAGGCGCTCGATCCCCGTCACTTCTTCGAGATAATCAATGA  >  NC_002947/2228207‑2228352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑