Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	4971582	4971689	108	2 [1]	[1] 2	fliD	flagellar filament capping protein

GGCCCGTCTGCTGATCGGTATTGATCCCCATCTGCGAAAGCATGGAGATGCTCCCCGCCCCGGTGCTCTTCACCAGCTCGTTACGCACTGTCGAGACCAAAGCGCGCATCGTTGCATCCCCGGTCAACGCACCGGCGGTGGTAGTGCTGGCATCGCCAGTGGCCGTG  >  NC_002947/4971659‑4971825                                |                                                                                                                                        ggCCCGTCTGCTGATCGGTATTGATCCCCATCTGCGAAAGCATGGAGATGCTCCCCGCCCCGGTGCTCTTCACCAGCTCGTTACGCACTGTCGAGACCAAAGCGCGCATCGTTGCATCCCCGGTCAACGCACcggc                                 >  2:256089/1‑136 (MQ=255)                                cTGCGAAAGCATGGAGATGCTCCCCGCCCCGGTGCTCTTCACCAGCTCGTTACGCACTGTCGAGACCAAAGCGCGCATCGTTGCATCCCCGGTCAACGCACCGGCGGTGGTAGTGCTGGCATCGCCAGTGGCCGtt  >  1:261312/1‑135 (MQ=255)                                |                                                                                                                                        GGCCCGTCTGCTGATCGGTATTGATCCCCATCTGCGAAAGCATGGAGATGCTCCCCGCCCCGGTGCTCTTCACCAGCTCGTTACGCACTGTCGAGACCAAAGCGCGCATCGTTGCATCCCCGGTCAACGCACCGGCGGTGGTAGTGCTGGCATCGCCAGTGGCCGTG  >  NC_002947/4971659‑4971825

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑