| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,868,821 | 0 | T | G | 48.0% | ‑5.7 / 11.0 | 25 | S297A (TCG→GCG) | gllR | HTH‑type transcriptional regulator GalR |
| Reads supporting (aligned to +/- strand): ref base T (3/10); new base G (3/9); total (6/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.91e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCAGCGACCTGGTGGGCGAGCCGCTCATCAACGAGGAAATGGTGGTGCTGGCCCGTCGGGGGCACCCGCTGTTGCACACTCACCTGACGCTCAAGGGCGTGCACCAGGCGCGCTGGGTGTTGCCGCGGGCCGGCTCGCCGGCCCGTCAGCTGCTCGACAACTGCTTCGCCGCCGCGGGCCTGACAGCGCCGTGGCCGGTGGTGGAAAGCGCTGATCTGGCGGTTATCCGTGGCCTACTGGTGCGTTCGGACATGCTGGCGGCGGTGT > NC_002947/2868687‑2868953 | ccAGCGACCTGGTGGGCGAGCCGCTCATCAACGAGGAAATGGTGGTGCTGGCCCGTCGGGGGCACCCGCTGTTGCACACTCACCTGACGCTCAAGGGCGTGCACCAGGCGCGCTGGGTGTTGCCGCGGGCCGGCTc < 2:243694/136‑1 (MQ=255) cAGCGACCTGGTGGGCGAGCCGCTCATCAACGAGGAAATGGTGGTGCTGGCCCGTCGGGGGCACCCGCTGTTGCACACTCACCTGACGCTCAAGGGCGTGCACCAGGCGCGCTGGGTGTTGCCGCGGGGCGGCTCg > 2:163062/1‑136 (MQ=255) aCCTGGTGGGCGAGCCGCTCATCAACGAGGAAATGGTGGTGCTGGCCCGTCGGGGGCACCCGCTGTTGCACACTCACCTGACGCTCAAGGGCGTGCACCAGGCGCGCTGGGTGTTGCCGCGGGGCGGCGGGCCGGc > 2:323126/1‑136 (MQ=255) aCCTGGTGGGCGAGCCGCTCATCAACGAGGAAATGGTGGTGCTGGCCCGTCGGGGGCACCCGCTGTTGCACACTCACCTGACGCTCAAGGGCGTGCACCAGGCGCGCTGGGTGTTGCCGCGGGGCGGCGCGCCGGc > 2:10/1‑136 (MQ=255) tgCTGGCCCGTCGGGGGCACCCGCTGTTGCACACTCACCTGACGCTCAAGGGCGTGCACCAGGCGCGCTGGGTGTTGCCGCGGGCCGGCTCGCCGGCCCGTCAGCTGCTCGACAACTGCTTCGCCGCCGCGGGCCt < 2:322174/136‑1 (MQ=255) ggggggCACGCGCTGTTGCAGACTCACCTGACGCTCTAGGGCGTGCACCAGGCGCGCTGGGTGTTGCCGCGGGCCGGCTGGCCGGCCCGTCAGCTGCTCGACAACTGCTTCGCCGCCGCGGGCCTGACAGCGCCGt < 2:242752/135‑1 (MQ=255) ggggggCACCGGCTGTGGCACACTCACCTGCCGCTCATGGGGGTGCACCAGGCGCGCTGGGTGTGGCCGCGGGCCGGCGCGCCGGCCCGTCAGCTGCTCGACAACTGCTTCGCCGCCGCGGGCCTGACAGCGCCGt < 2:252918/135‑1 (MQ=255) gggggcCACCCGCTGTGCCACCCCCACCTCCCGCCCACGGGCGTGCACCCGGCGCGGGGGGGGTGGCCGCGGGCCGGCGCGCCGGCCCGTCAGCTGCTCGACAACTGCTTCGCCGCCGCGGGCCTGACAGCGCCGt < 1:283368/135‑1 (MQ=255) gCACCCGCTGTTGCACCCTCCCCTGCCGCGCACGGGCGGGCCCCCGGGGCGCGGGGGGTGGCCGCGGGCCGGCGCGCCGGCCCGTCAGCTGCTCGACAACTGCTTCGCCGCCGCGGGCCTGACAGCGCCGTGGCCg < 1:117787/136‑1 (MQ=255) ggCTGTTCCACACCCCCCTGACCCTCAAGGGGGTGCACCCGGCGCGCGGGGTGTTGCCGGGGGCCGGCGCGCCGGCCCGTCAGCTGCTCGACAACTGCTTCGCCGCCGCGGGCCTGACAGCGCCGTGGCCggtggt < 1:243197/135‑1 (MQ=255) ttGCACACTCACCTGACGCTCAAGGGCGTGCACCAGGCGCGCTGGGTGTTGCCGCGGGCCGGCTCGCCGGCCCGTCAGCTGCTCGACAACTGCTTCGCCGCCGCGGGCCTGACAGCGCCGTGGCCGGTGGTGGaaa < 2:254582/136‑1 (MQ=255) cccccGCTCACGGGCGGGCCCCCGGCGCGGGGGGTGGGGCCGCGGGCCGGCGCGCCGGCCCGTCAGCTGCTCGACAACTGCTTCGCCGCCGCGGGCCTGACAGCGCCGTGGCCGGTGGTGGAAAGCGCTGATCTgg < 1:264258/132‑1 (MQ=255) tGACGCTCAAGGGCGTGCACCTGGCGCGCTGGGTGTGGCCGCGGGCCGGCTCGCCGGCCCGTCAGCTGCTCGACAACTGCTTCGCCGCCGCGGGCCTGACAGCGCCGTGGCCGGTGGTGGAAAGCGCTGATCTGGc < 2:169104/136‑1 (MQ=255) cgACGCTCAAGGGCGTGCACCAGGCGCGCGGGGGGGTGCCGCGGGCCGGCGCGCCGGCCCGTCAGCTGCTCGACAACTGCTTCGCCGCCGCGGGCCTGACAGCGCCGTGGCCGGTGGTGGAAAGCGCTGATCTGGc < 1:197183/135‑1 (MQ=255) tattgggCGTGCACCTGGGGGGGGGGGTGTTGCGGGGGGGGGGCGCGCGGGCCCGTCAGCTGCTCGACAACTGCTTCGCCGCCGCGGGCCTGACAGCGCCGTGGCCGGTGGTGGAAAGCGCTGATCTGGCGGTTAt < 2:120427/132‑1 (MQ=255) acgggCGTGCACCCGGCGCGCTGGGTGTGGCCGCGGGCCGGCTCGCCGGCCCGTCAGCTGCTCGACAACTGCTTCGCCGCCGCGGGCCTGACAGCGCCGTGGCCGGTGGTGGAAAGCGCTGATCTGGCGGTTATcc < 1:323126/134‑1 (MQ=255) aaGGGCGTGCACCAGGCGCGCTGGGTGTTGCCGCGGGCCGGCTCGCCGGCCCGGCAGCTGCTCGACAACAGCTTCGCCGCCGCGGGCCTGACAGCGCCGGGGCCGGGGGGGGAAAGCGCAGATCTGGCGGTTAtaa > 2:141093/1‑134 (MQ=255) gggCGTGCACCAGGCGCGCTGGGTGTTGCCGCGGGCCGGCGCGCCGGCCCGGGCGCTGCGCGGCAACAGCGTCGCCGCCGCGGGCCGGCCAGCGCCGGGGCCGGGGGGGGAAAGCGCTGGTCTGGGGGTTTTCCgg > 1:324200/1‑135 (MQ=255) gggCGTGCACCAGGCGCGCGGGGTGTTGCCGCGGGCCGGCTCGCCGGCCCGTCAGCTGCTCGACAACTGCTTCGCCGCCGCGGGCCTGACAGCGCCGTGGCCGGTGGTGGAAAGCGCTGATCTGGCGGTTATCCGt < 2:278879/136‑1 (MQ=255) ggCGCGCTGGGTGTTGCCGCGGGCCGGCTCGCCGGCCCGTCAGCTGCTCGACAACTGCTTCGCCGCCGCGGGCCTGACAGCGCCGTGGCCGGTGGTGGAAAGCGCTGATCTGGCGGTTATCCGTGGCCTACTGGTg < 2:38005/136‑1 (MQ=255) gcTGGGTGTGGCCGCGGGCCGGCTCGCCGGCCCGTCAGCTGCTCGACAACTGCTTCGCCGCCGCGGGCCTGACAGCGCCGTGGCCGGTGGTGGAAAGCGCTGATCTGGCGGTTATCCGTGGCCTACTGGTGCGTTc < 2:233517/136‑1 (MQ=255) ccGCGGGCCGGCTCGCCGGCCCGTCAGCTGCTCGACAACTGCTTCGCCGCCGCGGGCCTGACAGCGCCGTGGCCGGTGGTGGAAAGCGCTGATCTGGCGGTTATCCGTGGCCTACTGGTGCGTTCGGACATGCTgg < 2:176310/136‑1 (MQ=255) cgcgGGCCGGCGCGCCGGCCGGTCAGCTGCTCGACAACTGCTTCGCCGCCGCGGGCCTGACAGCGCCGTGGCCGGTGGTGGAAAGCGCTGATCTGGCGGTTATCCGTGGCCTACTGGTGCGTTCGGACATGCTggc < 2:65494/136‑1 (MQ=255) gcggggcgggTCCCCCGCCCGGCAGCAGCGCGACCACAGCAACGCCGCCGCGGGCCTGACACCGCCCGGGGCGGGGGGGGGAAGCGCAGAACAGGCGGTGATACGTGGGCTAAGGGTGGGGTCGGGCATGCTggag > 2:57533/1‑134 (MQ=255) ggCGCGCCGGCCCGTCAGCTGCTCGACAACTGCTTCGCCGCCGCGGGCCTGACAGCGCCGTGGCCGGTGGTGGAAAGCGCTGATCTGGCGGTTATCCGTGGCCTACTGGTGCGTTCGGACATGCTGGCGGCGgtgt < 1:337550/136‑1 (MQ=255) | CCAGCGACCTGGTGGGCGAGCCGCTCATCAACGAGGAAATGGTGGTGCTGGCCCGTCGGGGGCACCCGCTGTTGCACACTCACCTGACGCTCAAGGGCGTGCACCAGGCGCGCTGGGTGTTGCCGCGGGCCGGCTCGCCGGCCCGTCAGCTGCTCGACAACTGCTTCGCCGCCGCGGGCCTGACAGCGCCGTGGCCGGTGGTGGAAAGCGCTGATCTGGCGGTTATCCGTGGCCTACTGGTGCGTTCGGACATGCTGGCGGCGGTGT > NC_002947/2868687‑2868953 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |