Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,452,2780AC50.0% 2.0 / 12.7 37S18R (AGC→CGC) PP_5556bacteriophage lysis protein
Reads supporting (aligned to +/- strand):  ref base A (12/5);  new base C (14/3);  total (26/11)
Fisher's exact test for biased strand distribution p-value = 6.88e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

CGATCACCAAACGTATCAATGGTGGTAGCAACGGTCTGGAGGATCGCAAGGCCCTCTACAAGCGAGCGCTCGAGGTGCTGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCAGCGCTGGCGGCGCCCGGGCAGCCTGGGTGTGGCAGGCCAACGCCTATAAGGCGCAGCTCGCTGATCAGGCCGATGACTTCGGCAAGCAGTTGGCGGAGAAGGATCGCGCGCACG  >  NC_002947/3452145‑3452392
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cGATCACCAAACGTATCAATGGTGGTAGCAACGGTCTGGAGGATCGCAAGGCCCTCTACAAGCGAGCGCTCGAGGTGCTGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGccgcccgc                                                                                                                  >  1:73374/1‑136 (MQ=255)
 gATCACCAAACGTATCAATGGTGGTAGCAACGGTCTGGAGGATCGCAAGGCCCTCTACAAGCGAGCGCTCGAGGTGCTGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCAgcg                                                                                                                 >  2:92400/1‑136 (MQ=255)
     aCCAAACGTATCAATGGAGGTAGCAACGGTCTGGAGGATCGCAAGGCCCTCTACAAGCGAGCGCTCGAGGTGCTGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCAGCGCTgg                                                                                                             >  1:33283/1‑136 (MQ=255)
                 aaTGGTGGTAGCAACGGTCTGGAGGATCGCAAGGCCCTCTACAAGCGAGCGCTCGAGGTGCTGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCAGCGCTGGCGGCGCCCGGGc                                                                                                 >  2:307134/1‑136 (MQ=255)
                         tAGCAACGGTCTGGAGGATCGCAAGGCCCTCTACAAGCGAGCGCTCGAGGTGCTGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCAGCGCTGGCGGCGCCCGGGCCGCCTggg                                                                                         >  1:158337/1‑136 (MQ=255)
                           gCAACGGTCTGGAGGATCGCAAGGCCCTCTACAAGCGAGCGCTCGAGGTGCTGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCAGCGCTGGCGGCGCCCGGGCAGCCTCGgtg                                                                                       >  1:360445/1‑136 (MQ=255)
                                ggTCTGGAGGATCGCAAGGCCCTCTACAAGCGAGCGCTCGAGGTGCTGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCG‑CAGCGCTGGCGGCGCCCGGGCAGCCTGGGTGTGGCAg                                                                                 <  2:182121/136‑1 (MQ=255)
                                 gTCTTGAGCTTCTCAAGCCCCTCTACCAGCGCGGGCTCGTGGTGCTGCTGTGCGGGGTTGGGCCACCCGCCTGGGGGCGGTGGCGCTGGTGCGGGCCGCCTGCGCTGGCGGCGCCCGGGCAGCCTGGGTGTGGCAg                                                                                 <  2:198424/136‑1 (MQ=255)
                                 gTCTGGAGGATCGCAAGGCCCTCTACACGCGAGCGCTCGAGGTGCTGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCAGCGCTGGCGGCGCCCGGGCAGCCTGGGTGTGGCAg                                                                                 <  1:322479/136‑1 (MQ=255)
                                      gaggaTCGCAAGGCCCTCTACAAGCGAGCGCTCGAGGTGCTGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCACCGCTGGCGGCGCCCGGGCAGCCTGGGTGTGGCAggacca                                                                            >  1:198424/1‑132 (MQ=255)
                                              cAAGGCCCTCTACAAGCGAGCGCTCGAGGTGCTGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCCGCGCTGGCGGCGCCCGGGCCGCCGGGGTGTGGCAGGCCAACGCCtata                                                                    >  1:351103/1‑136 (MQ=255)
                                              cAAGGCCCTCTACAAGCGAGCGCTCGAGGTGCTGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCAGCGCAGGCGGCGCCCCGGCCGCCTGGGTGTGGGGGGGCACCGccgaga                                                                    >  1:343756/1‑132 (MQ=255)
                                              cAAGGCCCTCTACAAGAGAGCGCTCGAGGTGCTGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGAGCTGCTGCTGGCCGCCAGCGCAGGCGCCGCCCCGGCACCCAGGGTGTGTCACGCCAACGCCaata                                                                    >  1:174294/1‑136 (MQ=255)
                                               aaGGCCCTCTACAAGCGAGCGCTCGAGGTGCTGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCCGCGCAGGCGGCGCCCGGGCAGCCGGGGTGTGGCAGGCCAACGCCGATaa                                                                   >  1:141144/1‑136 (MQ=255)
                                                  ccccTCTACACGCGAGCGCTCGTGGGGCTGCAGTGAGCGCTGGGGCCCCCCGCCTGGGCGCCGGGGCGCGGCTGCGGGCCGCCAGCGCGGGCGGCGCCCGGGCAGCCTGGGTGTGGCAGGCCAACGCCTATAAGgc                                                                <  1:109950/135‑1 (MQ=255)
                                                           aaGCGAGCGCTCGAGGTGCAGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCCCCGCGGGCGGCGCCCGGGCCGCCGGGGTGTGGGCGGCCACCGCCGATAAGGCGCCgcgcgc                                                       >  2:291594/1‑136 (MQ=255)
                                                                agcgCTCGAGGTGCTGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCCGCGCTGGCGGCGCCCGGGCCGCCGGGGTGTGGCAGGCCAACGCCGATAAGGCGCAGCTCGCTGATc                                                  >  2:22118/1‑136 (MQ=255)
                                                                agcgCTCGAGGTGCTGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCCGCGCGGGCGGCGCCCGGGCAGCCTGGGTGTGGCAGGCCCACGCCGATAATGCGCAGCTCGCTGATc                                                  >  2:183028/1‑136 (MQ=255)
                                                                agcgCTCGAGGTGCTGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCCGCGCGGGCGGCGCCCCGGCCGCCGGGGTGTGGCCCGCCAACCCCAAAAAGGCGCAgcgcgcaggta                                                  >  2:278414/1‑131 (MQ=255)
                                                                   gcTCGAGGTGCTGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCCCCGCGGCCCCCCCCCGCGCCGCCGGGGTGTGGCCGGCCCCCCCCGAGAAGGCGCCGCTCGCTGGTCAgg                                               >  1:82374/1‑136 (MQ=255)
                                                                   gcTCGAGGTGCTGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCAGCGCGGGCGGCGCCCGCGCCGCCGGGGTGTGGGAGGCCAACGCCAAAAAGACGCAGCTCGTTGATCAgg                                               >  2:355513/1‑136 (MQ=255)
                                                                     tCGAGGTGCTGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCCGCGCTGGCGGCGCCCGGGCAGCCTGGGTGTGGCAGGCCCACGCCGATAAGGAGCAGCTCGCGGATCAGGcc                                             >  1:184953/1‑136 (MQ=255)
                                                                     tCGAGGTGCTGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCCGCGCGGGCGGCGCCCGGGCCGCCGGGGTGTGGCCGGCCCACGCCAAAAAGGCGCAGCAGGCGGATCACGcc                                             >  2:345464/1‑136 (MQ=255)
                                                                     tCGAGGTGCTGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCACCGCAGGCGGCGCCCGGGCAGCCTGCGTGTTGCCGGCCCACGCCGAAAAGGCGCCGCGCGCGGCTCAgggc                                             >  2:255266/1‑134 (MQ=255)
                                                                                      gcgcTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCCGCGCTGGGGGCGCCCGGGCCGCCGGGGGGTGGCAGGCCAACGCCGATAAGGAGCCGCTCGCTGATCAGGGCGCTGACATCGGCAAGCa                            >  2:357101/1‑136 (MQ=255)
                                                                                        gcTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCCGCGCTGGCGGCGCCCGGGCCGCCTGGGTGTGGGAGGCCAACGCCTATAAGGGGCCGCGCGCTGAGCCGGCCGATGACTTAGGCAAGCAGt                          >  2:75245/1‑136 (MQ=255)
                                                                                        gcTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCCGCGCTGGCGGCGCCCGGGCAGCCTGGGTGTGGCAGGCCAACGCCGATAAGGCGCCGCTCGCGGATCAGGCCGATGACTTCGGGAAGCAGt                          >  2:89877/1‑136 (MQ=255)
                                                                                        gcTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCCGCGCTGGCGGCGCCCGGGCAGCCGGGGTGTGGCAGGCCAACGCCTATAAGGCGCAGCACGCGGCTCAGGCCGATGACTTCGGCAAGCAGt                          >  2:261179/1‑136 (MQ=255)
                                                                                        gcTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCAGCGCAGGCGGCGCCCGGGCAGCCTGGGTGTGGCAGGCCAACGCCTAAAAAGCGCAGCTCGCAGATAAGGCCGATGACTTCGGCAAGCAGt                          >  1:176912/1‑136 (MQ=255)
                                                                                        gcTAGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCAGCCCGAGCGCCGCCCCGGCAGCCTCGGAGAGGCAGGCCCACCCCTATAACACGCAGCTCGCAGATCAGCCCCAAGACTTAAGCAAGCAga                          >  1:40474/1‑135 (MQ=255)
                                                                                          ttGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCCGCGCAGGCGGCGCCCGGGCAGCCTGGGTGTGGCAGGCCAACCCCGATAAGGCGCAGCTCGCTGATCAGGCCGATGACTTCGGCAAGCAGttt                        >  1:69668/1‑135 (MQ=255)
                                                                                            gggCCCCCCGGCTGGGGGCGGGGGCGCTGCTGCGGGCCGCCCGCGGGGGCGGCGCCCGGGCAGCCTGGGTGTGGCAGGCCAACGCCTATAAGGCGCAGCTCGCTGATCAGGCCGATGACTTCGGCAAGCAGTTGGc                      <  1:28521/136‑1 (MQ=255)
                                                                                                 ccgcGCCTGGCCGCCGTGGCGGGGGTGCTGGCCCACAGCGCGGGCGGCGCCCGGGCAGTCTGGGTGTGGCAGGCCAACGCCTATAAGGCGCAGCTCGCTGATCAGGCCGATGACTTCGGCAAGCAGTTGGCGgaga                 <  2:69488/133‑1 (MQ=255)
                                                                                                 ccccGCCGGGTCGCCGGGGCGGTGGTGCGGGCCGCCTGCGCTGGCGGCGCCCGGGCAGCCTGGGTGTGGCAGGCCAACGCCTATAAGGCGCAGCTCGCTGATCAGGCCGATGACTTCGGCAAGCAGTTGGCGgaga                 <  2:252702/135‑1 (MQ=255)
                                                                                                          gtggcggTGGCGCTGCTGCGGGCCGCTTGGGCTGGCGGCGCCCGGGCAGCCTGGGTGTGGGAGGCCAACGCCTATAAGGCGCAGCTCGCTGATCAGGCCGATGACTTCGGCAAGCAGTTGGCGGAGAAGGATcgcg        <  1:1039/130‑1 (MQ=255)
                                                                                                           gcGCCGGGGCGCTGGTGCGGGCGGCCAGCGCGGGCGGCGCCCGGGCAGCCTGGGTGTGGCAGGCCAACGCCTATAAGGCGCAGCTCGCTGATCAGGCCGATGACTTCGGCAAGCAGTTGGCGGAGAAGGATcgcgc       <  1:37512/135‑1 (MQ=255)
                                                                                                           gcGCCGGGGCGCGGCGGCGGGCCGCCCGCGCGGGCGGCGCCCGGGCAGCCTGGGTGTGGCAGGCCAACGCCTATAAGGCGCAGCTCGCTGATCAGGCCGATGACTTCGGCAAGCAGTTGGCGGAGAAGGATcgcgc       <  1:89891/135‑1 (MQ=255)
                                                                                                                ggggCGCGGGTGCGGGCCGCCCGCGCGGGCGGCGCCCGGGCAGCCTGGGTGTGGCAGGCCAACGCCTATAAGGCGCAGCTCGCTGATCAGGCCGATGACTTCGGCAAGCAGTTGGCGGAGAAGGATCGCGCGCACg  <  1:22118/134‑1 (MQ=255)
                                                                                                                                     |                                                                                                                  
CGATCACCAAACGTATCAATGGTGGTAGCAACGGTCTGGAGGATCGCAAGGCCCTCTACAAGCGAGCGCTCGAGGTGCTGCAGTGAGCGCTTGGGCCACCCGCCTGGTCGCCGTGGCGCTGCTGCTGGCCGCCAGCGCTGGCGGCGCCCGGGCAGCCTGGGTGTGGCAGGCCAACGCCTATAAGGCGCAGCTCGCTGATCAGGCCGATGACTTCGGCAAGCAGTTGGCGGAGAAGGATCGCGCGCACG  >  NC_002947/3452145‑3452392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑