New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1015841 =	0 (0.000)	21 (0.870)	15/264	0.3	100%	intergenic (‑68/‑700)	SBRG_Ecoli_galE/prfC	SBRG_Ecoli_galE/peptide chain release factor 3
	?	NC_002947	4541196 =	NA (NA)					intergenic (+730/‑85)	PP_4022/PP_4024	hypothetical protein/transposase

CGCATGCAGGCATGAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACCCTCTGTTTTATAATCACTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1015974‑1015841 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAG  >  NC_002947/4541196‑4541311                                                                                                                                                                                                                                                            CGCATGCAGGCATGAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACCCTCTGTTTTATAATCACTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCCGT                                                                                                                    >  2:410788/1‑136           CATGAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACCCTCTGTTTTATAATCACTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCCGTAAGGGATCCA                                                                                                          <  2:65628/136‑1                                      AAAGCGCAATCATTCATAAACCCTCTGTTTTATAATCACTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCT                                                                               <  2:9409/136‑1                                      AAAGCGCAATCATTCATAAACCCTCTGTTTTATAATCACTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCT                                                                               <  2:115415/136‑1                                      AAAGCGCAATCATTCATAAACCCTCTGTTTTATAATCACTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCT                                                                               <  2:349575/136‑1                                              ATCATTCATAAACCCTCTGTTTTATAATCACTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCG                                                                       <  1:257136/136‑1                                                          CCCTCTGTTTTATAATCACTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCC                                                           <  2:467473/136‑1                                                                GTTTTATAATCACTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTT                                                     >  1:239016/1‑136                                                                GTTTTATAATCACTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTT                                                     >  1:291714/1‑136                                                                GTTTTATAATCACTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTT                                                     >  2:55417/1‑136                                                                       AATCACTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTG                                              <  1:410788/136‑1                                                                            CTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCC                                         >  1:515174/1‑136                                                                            CTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCCGTAAGGGATCCATCATCCCCACATTCCAACC                                                                                       <  1:3587/90‑1                                                                            CTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCCGTAAGGGATCCATCATCCCCACATTCCAACC                                                                                       >  2:3587/1‑90                                                                              TAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAG                                       >  2:421128/1‑136                                                                                         AAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGAT                            <  2:15945/136‑1                                                                                         AAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGAT                            >  2:16497/1‑136                                                                                                               TAAACGATTCCACTAATTTATTCCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAA      >  2:326731/1‑136                                                                                                               TAAACGATTCCACTAATTTATTCCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGT          <  1:153953/132‑1                                                                                                               TAAACGATTCCACTAATTTATTCCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGT          >  2:153953/1‑132                                                                                                                   CGATTCCACTAATTTATTCCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAG  <  1:16497/136‑1                                                                                                                                                                                                                                                            CGCATGCAGGCATGAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACCCTCTGTTTTATAATCACTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1015974‑1015841 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAG  >  NC_002947/4541196‑4541311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.